CI01000299_01197545_01215711


Basic Information

Item Value
gene id CI01000299_01197545_01215711
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1197422 ~ 1215989 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_01197545_01215711.mRNA
ATATATATCGCACCTAGCCTCTCTTGATAAACGTGTAGATAGCGAGCGAGCACGCACAGTCGATAATGCAGTGAGCGCGTGGGCACCGTCCATTAAATAGCAGTTAATTACCCTGCACTGGAGATGAAAGGCTCATTTGTGAAACGGCCTCCTTCTCGCGTTGATGAAATGGCTCTTCAAGTTCACACGCGTGTTCTCGTGCAAACAAATGTGCACATTCAACATGTGCAGAATCCTAATGATGCCGCTTCAATCACAGTCCGTGGTCTCGCTGGCTGGCAGGGAGGAAAAAGGATTGGAGGAGAGACCTTGGATGCAGACAGTCCTTCGGCTTGCCATCGTGGCAAAATAATCACACAAAGGTGTCTGTGTGTCCCTAGCCTGGACTTCTGGAAAAAGGGGGATGTGAGCGGAAGAGATAAAGAAGATGAGGGCTTCTGGGCAAACCCAACTCAGACATGTGGCTACCATAAATTATTAAAAGCTCATTGCTTATTCTGCCTGCTTGTCCTCATCTTTGCACTGTGTAATGGAGGCCCTGGTGAGAGGATCAAGGTTTTGGAAATAGGGCTTTTTATGATTCAGAGTCATAATCCACCCATGAGGGAGCAAAGCCCGACCCCAAGGGTAGAGGTGGAGATTGTACAGACGAGGAGGAGACGCCTTGGGAACAGAGGATGCATGTAAATTGGAGCGACTATAAGGAGTCTGAGAATTTCGAAAAGGGACTCTGGGACTAGGGTGCGCACGCCGAATGCCTTCAAAATGTGTGATAAGAAAATGGGAAATTATGCAATTCGAATGTACCTGCTTATGCTTGAGGAAGCTTATAGCCTTTAGAATTTAAAGCTGCTCTAGTCTCGCACAGCCACGCGTTTGACTATCGGCATGAAGTCTGGTGCACATTGCAGCTCATGCACACCTGAAAAATAGAGCATACCACAAAAAAAAAACAAAACAAAAAA
>TU464803
TCTTTGTTTTCCTCGCACACACACGCACACGCTCAAATTCACTCTGCTCCATTGCATCCCAAGCAGGCGTATTAGTAATCCATCAATGCTATTTCCAGTCCGTGGTCTCGCTGGCTGGCAGGGAGGAAAAAGGATTGGAGGAGAGACCTTGGATGCAGACAGTCCTTCGGCTTGCCATCGTGGCAAAATAATCACACAAAGGTGTCTGTGTGTCCCTAGCCTGGACTTCTGGAAAAAGGGGGATGTGAGCGGAAGAGATAAAGAAGGTGAACAAAACCGGTGACATATGCACTCGGTCCTGGGAGGCTCTGCCACATAATATAGCCGTGTCACGGGCTAGCGTGTGCCGTGGAAGTCCGGATATGAGTTGGAGTACGGAGCGGGGTGGGTGGATGATGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_01197545_01215711.mRNA False 965 mRNA 0.47 4 1197422 1215989
TU464803 True 401 lncRNA 0.52 1 1197950 1198350

Neighbor

gene id symbol gene type direction distance location
CI01000299_01139684_01147241 NA coding upstream 50174 1139497 ~ 1147248 (+)
CI01000299_01049508_01055558 NA coding upstream 141686 1049390 ~ 1055736 (+)
CI01000299_01036243_01046776 NA coding upstream 149819 1035037 ~ 1047603 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 285450 862803 ~ 911972 (+)
CI01000299_00826470_00828773 NA coding upstream 368462 826433 ~ 828960 (+)
CI01000299_01855614_01858092 SLITRK6 coding downstream 639625 1855614 ~ 1858703 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 900872 2116861 ~ 2121858 (+)
CI01000299_02195854_02198465 NA coding downstream 979809 2195798 ~ 2198925 (+)
CI01000299_02612562_02613926 NA coding downstream 1396510 2612499 ~ 2614792 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding downstream 1480643 2696632 ~ 2704220 (+)
G404424 NA non-coding upstream 1686 1195477 ~ 1195736 (+)
G404385 NA non-coding upstream 55786 1141356 ~ 1141636 (+)
G404075 NA non-coding upstream 69978 1125740 ~ 1127444 (+)
G404074 NA non-coding upstream 72148 1123579 ~ 1125274 (+)
G404137 NA non-coding upstream 121529 1070608 ~ 1075893 (+)
G404544 NA non-coding downstream 100287 1316276 ~ 1316603 (+)
G404603 NA non-coding downstream 187768 1403757 ~ 1404012 (+)
G404709 NA non-coding downstream 388354 1604343 ~ 1604683 (+)
G404716 NA non-coding downstream 415855 1631844 ~ 1632341 (+)
G404735 NA non-coding downstream 471890 1687879 ~ 1689001 (+)
G403972 NA other upstream 591072 604870 ~ 606350 (+)
G403609 NA other upstream 786634 364139 ~ 410788 (+)
G403578 NA other upstream 1125151 35462 ~ 72271 (+)
G405609 NA other downstream 1938608 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 2915269 4131060 ~ 4133941 (+)
G405842 NA other downstream 3079544 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3273829 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3486393 4703071 ~ 4704780 (+)
G404436 NA non-coding downstream 13305 1211655 ~ 1211871 (+)

Expression


Co-expression Network