CI01000299_06242885_06246604 (LAMP1)


Basic Information

Item Value
gene id CI01000299_06242885_06246604
gene name LAMP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6241996 ~ 6246604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06242885_06246604.mRNA
AGTGTGACGGTGTTCGCGCTGCCGTCCTCAGCTGCGGTGGCTAATGGAAGCTCCTGCGGCGCCGCCGGTGTTCCTCCAGAGCTGCTGCTGTCGTTCGGAGCGGGTCACATGTTCTCTCTGGTGTTCTCCAGCGACGGGCGTCTGTACAGGGTGGCCAACATGAGCCTGCAGTACAACCTCAGTGACACCAGCACCTTCCCACAATCCTCCAGCGCAGGAGTCGTGTCCGTGATGACGAACGTGTCGGAGATCTCTGCGCGGCTGAACAGCACCTACAGGTGTCTGAGCTCCACCTCCGTCAGTCTGGATGCAGGAGTGAACGTCACCTTCGCTAATGTTCGCATGGAGGCGTACATGACCTCAGCAAACCTCAGCAAAGACGGTACGGTGTTTCAAACAGTGAAGACCGTCAATGAGGTCGTGAACCTGCAGCCCAACAGAACGACGGCCTCGGGGTCATGCGGGGTCCCAGTGGCCACCCTGACGCTGGCCGAGGATCTGACCAACCTCACCTTCACCTTCACGCTGAACTCGACCACACAGAAGTTTCATCTGAGTGCCGTGAGCGTCTCCGCCTTCTGGTCCGACATGACGGATCGGTTCGTGGCGAGCAACAGCTCTCTGGACTACCTGCAGTGCAGCGTGGGCCGCTCGTACATGTGCAGCACGGAGCAGATGCTCGGCGTAGTGCCCACCTTCTCCATCAACACCTTCAGACTGCAGCTGCAGCCCTTCAACGTCACTGCTAACAAGTTCTCTGCAGCGGAGGAGTGTCGTGTGGATCGGGAGAACATGCTCATTCCCATCATCGTTGGAGCGGCTCTGGCTGGTCTGGTGCTGATCGTCCTCATCGCGTATCTGATCGGCAGGAAGAGGACACACGCCGGATACCAGACCATCTGATCATCATCATCATCATCCTGCATCTGTGCTGTGATTGGCTGCTTCAGAGCAGCTGCAGCTGGATGCACTGGACTGAGTGAGTGAGTGTGTGTGAGAGAGAGCTGGTTCATTCTGTTCTTCTTTGCTGTGTGGTCAAAAGTCAAGGTCAGGGGTCACTGGTGTGTGTGTGTATGTCTAGTCAACTGTCATCTGTGTCTCAACAACTCGTTTCCTGTTGGTCAGTTTGTTACTCTAAAGCCGTTATATTAATGAATCTGTGTAAATAATGATTGTTTTAAGTCAGAGGTCACGAGTGAGACTACAAATAACTGATCAACCAAACTGGACAAACGAGTCTGACAAACCTTCCCTCGTCCTCATTTATACAAATCATTCAGAAATAATGTCATTTTATTATTATTATAATGTTCTTTTTATTCTAATAATGCTAAATGTTTTCGGTGACACTTTACAATAAGGTTCATTTGTTGACATTAATTGATACATTAATAATAATGAGCGATATATTCCAGCATTTATGAATCTTTGTTAATGTTAGTTTATAAAAATGTGCGTTAGTTCACAGTGAATTAACTAATGAGAACAGATACAACTCTTGATTTTAATAATTAGTAAATGTTGATATTAATAAACGCTGTGGAAGTGTTGTTCATCGTTAGTTCATGTCAACTAATGTTAACGAATGAACCTTATGACCATGTTTCCTGTCTGTAGTCATTTTAATTGGCTTCATGTAAAAACAATAGAAGTTTATGACATCACCTCATTTACATAAGTGTGTGTAGTAAATGTTCTCATCATGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAGGTGTCTGCATTATAAGCACAGCTGTCACCGTCAAATACATCAATAAA

Function

symbol description
lamp1 Enables enzyme binding activity. Involved in several processes, including Golgi to lysosome transport; granzyme-mediated programmed cell death signaling pathway; and positive regulation of natural killer cell degranulation. Located in several cellular components, including cytolytic granule membrane; late endosome; and perinuclear region of cytoplasm. Colocalizes with lysosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06242885_06246604.mRNA True 1792 mRNA 0.47 6 6241996 6246604

Neighbor

gene id symbol gene type direction distance location
CI01000299_06208641_06214104 TMCO3 coding downstream 27892 6208612 ~ 6214104 (-)
CI01000299_06197276_06199730 TFDP1 coding downstream 42266 6196606 ~ 6199730 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding downstream 46981 6185488 ~ 6195015 (-)
CI01000299_06145156_06154533 NA coding downstream 87463 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 97128 6129073 ~ 6144868 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 9253 6255857 ~ 6266210 (-)
CI01000299_06268189_06268676 NA coding upstream 21585 6268189 ~ 6269395 (-)
CI01000299_06274590_06278765 PROZ coding upstream 27823 6274427 ~ 6279132 (-)
CI01000299_06281861_06289368 NA coding upstream 32779 6279383 ~ 6290025 (-)
CI01000299_06291499_06294321 F7 coding upstream 43945 6290549 ~ 6294875 (-)
G407939 NA non-coding downstream 9721 6226412 ~ 6232275 (-)
G407923 NA non-coding downstream 19617 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 58461 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 96072 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 127506 6108478 ~ 6114490 (-)
G407986 NA non-coding upstream 142772 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 145440 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 170522 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 192917 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 193643 6440247 ~ 6440470 (-)
G407805 NA other downstream 406007 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 785888 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1313178 4913373 ~ 4927715 (-)
G407413 NA other downstream 1691275 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 285397 6526127 ~ 6532048 (-)

Expression


Co-expression Network