G404074


Basic Information

Item Value
gene id G404074
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1123579 ~ 1125274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU464483
AGAGCCATCTATTGGACAAATACTGAAACTAGTTTGAGTTGGCATTGAGTTAATATTATAAAAATAATAAAACAAATATGAACAGTACTCACGTGCTTCCTAAAGTATAGGCTAGGCTACTTTAATCAGGGAAAACGTCATACCTCATTGCAGATAAGGGGATATGTTAATGATAATCTTAAAATTCATTTCATTGTGATTATGCTATACTGTTGCGTCACACAATCATACAGACAATACTCATCAGATCAGGCATATTTAAAGGCTTTAAAAACTTACAGATCTGCTGCACTTCCCTATGGACAGACCTCAAATTCATTTCAAACTCATAAGGAGAACATGTTCTCTATTTAAAGTGAAGGAACTGTTTATCTCTACAGTGGGCAACACAAAACCAACCTACATACCACTACACAGGAGCTGGACACCATGGTAATGTTCCATTCATAAGAACATCAGCTAAAAATACACAGTAAAAATGATGTCTACTTTAACTAGATGCCATGTATTTCTCAACCCAAAAACATGAAATGCATCTCATACACAATTCTTCCAATAACCTCAAATTAGTAAAATTTATTTATATATGCACCCACCAACAAAAAGGCATTTAGACCACCCCTCTGCATTAAGCATGTTTGCTAAGAGGGATGCTAGGTAACTTAGCTTACTCTGCATTTTTATAATTGGATTTGACAAATCGAATGAACAGCTGATAGACAGTGTTGAATTTATCTGTTCATGTTGGTCCAGTAAAAGCCAAGTCAATACCAACCCCCTCACATCAAAGATTTATGGTTAATTACTAGCCCAGAAGTTACACCTTAATGTCTTGCATGCTGTAAAAGTGAGAAGTTAGTGAAAACATGACAGAAACAAAAACACAGCCACACAATGCACCTCTTTATCTTTTTATTTATAAAAAAAAAAAAAAAAGTCATTTAAAATTACATTTGATGTCAAACAAGTCATTATAAAAATAACTTCAAAATGTACAATTGCATCTTTCTGGGGGATATATATAATATATATATATAGCAATGATGGAACTTCCAACAAAAACATACTTGTGGGGTACAATCTCCACAATCCTCTACAGGCCGGGACAAGTGCAATACCTTCCAAACACACAGCATTGCTACCAATCCCAACCTGTGCAGAAAGGGACCAAACGGCTCCAAAGTGGTTCTCAGATGTGTGCTGCCACTGTCAGTTTTGCATGGATTTGCACAGCACACAGTCTTAAAAGCTGAATGCAAACCAGCAAAACTGACCGGGGTCCAGCAATGTTACAGTGTATGGAGACCCTGGGAGAGTTTGCGGAAGTCTTCGGATCCCAGATGCATTTAGCTAGAAGTACTTCAAGTGCTCACACTGCAGTAGATGACAGAAATACTACCTGCACTATAAGCACTTTAGCACTGCTGAAACTATCACAATGACAGCATTGGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU464483 True 1455 lncRNA 0.37 2 1123579 1125274

Neighbor

gene id symbol gene type direction distance location
CI01000299_01049508_01055558 NA coding upstream 67843 1049390 ~ 1055736 (+)
CI01000299_01036243_01046776 NA coding upstream 75976 1035037 ~ 1047603 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding upstream 211607 862803 ~ 911972 (+)
CI01000299_00826470_00828773 NA coding upstream 294619 826433 ~ 828960 (+)
CI01000299_00795673_00796901 GPC6 coding upstream 326422 795673 ~ 797157 (+)
CI01000299_01139684_01147241 NA coding downstream 14223 1139497 ~ 1147248 (+)
CI01000299_01197545_01215711 NA coding downstream 72148 1197422 ~ 1215989 (+)
CI01000299_01855614_01858092 SLITRK6 coding downstream 730340 1855614 ~ 1858703 (+)
CI01000299_02118245_02120332 SLITRK1 coding downstream 991587 2116861 ~ 2121858 (+)
CI01000299_02195854_02198465 NA coding downstream 1070524 2195798 ~ 2198925 (+)
G404137 NA non-coding upstream 47686 1070608 ~ 1075893 (+)
G404016 NA non-coding upstream 473765 649415 ~ 649814 (+)
G403971 NA non-coding upstream 519996 602832 ~ 603583 (+)
G403965 NA non-coding upstream 540456 582756 ~ 583123 (+)
G403952 NA non-coding upstream 572837 550501 ~ 550742 (+)
G404075 NA non-coding downstream 466 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 16082 1141356 ~ 1141636 (+)
G404424 NA non-coding downstream 70203 1195477 ~ 1195736 (+)
G404436 NA non-coding downstream 86381 1211655 ~ 1211871 (+)
G403972 NA other upstream 517229 604870 ~ 606350 (+)
G403609 NA other upstream 712791 364139 ~ 410788 (+)
G403578 NA other upstream 1051308 35462 ~ 72271 (+)
G405609 NA other downstream 2029323 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3005984 4131060 ~ 4133941 (+)
G405842 NA other downstream 3170259 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3364544 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3577108 4703071 ~ 4704780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G908 NA non-coding CM030121.1 CM030121.1 5557607 ~ 5558515 (+)
tiger barb (Puntius tetrazona) G720 NA non-coding NC_056699.1 CM032068.1 3285956 ~ 3286209 (-)