G407909


Basic Information

Item Value
gene id G407909
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6093291 ~ 6099458 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468704
CTTTGCTATTGCCTTCATTTGGACAAAAGAAAGGTGCATCTCATTCACTCAGTTGGTCTGTACACACGTCACATGAACACTCGTCATACAAAACACCCTTCTGAGGCTCCTTCATCAGATACTGAACACATCAAGAACAGGAGAATTGCTCACAAGTGACATTATTGCATACTTCATACTGTGCGTTTGGATTATTTCTTGTTTTTTTTTTCTTCACAAAAGCATTATTCTGTGATATAAAAATAAATAGCAATTCATTTGGGCGGGAAAACAGGGCTGAAATGCATAAGCACTGAAACATGCATGACTGAAGGACGTACAGGAACCGTGTTAACAAAAATACAACACCATACGAAACATGAATCTCCAGCGCATATTTCACCCCTAAATCATTAGAAAATAAGAAATGATTTTCCCTGTATAGAAAATAAAGCATCAGTATTTGTCACATTACTGTAAAAATATTTAGCATTACAATAATGTGAATTTGAAGGGTTAAATGTGTTAAATTGTCATCAAAATTATGTCAGAATGCTCACAAAATGTTTCTTTAAGCACTAAGATATGTAAATATTAATATATATGTGTGTGTGTATAAATATACATGTTAAAATATAATTGGTATTGGCCGATAAAAGCAAATTTTTTCGATAGCTGATAGTGTGAATATATACATATATATATTTTAGAGATGCACCGATATATCGGCCAATAAAAGCAAATTATCACACTATCAGCTGATAAAAACAGCCGACAGGGCCGATATATCCTGTCAATCAAAAGAGGGCAGGACAATGCACTGAATTTGTGCTTTGTGTAAAGAAAATACTAAGAAACCAGTTTGATGTTCAATATTAATAGTAATTATATGAATTAATAACATTCAGAAAGTTAAGAAATATCAATTTAATCTTCAGAATTTAGTTAATGTGTGTTAATATTAATTTGAGTAATGTGTTTGTTTATAACTGATAGCAGTTACTGTGAAACAAGCTGATGAAATAGAGAGAATAAAGGTTTTCTTTGCATTTCTTTCAAAATATAATGATTAATTATTAATCATAATGAAATTATCATTAATTTAAAAGAAGGTATAAAAGGCAGGACCCCCAAATTATCAGCAGAAATCTCTCTGAATAATCGGTTATCGGTACCGGTGGAGAAATTTAGTATCGGTGCATCTCTAATATATATTATATACTGTATATACATATATATATATATACAGACACACACACATTCACATTCAGTTCATTTAGCAGACGCTTTTATCCAAATAATCTTAAATATATATAATATATATTTATATTTATTTATATTGTTTTGATTTTAGGGTGAAATATGACCAGGACATGTTCTTGATAGTTTTCATGAAATGCACCAAAATAATCACATCCATATCAAAAGTTTCTATAAAGTGTGACGGGATGGACTGGGAGTTATTATCCATTATTAATCAATAAAACACACTCATGCGCGCTCGCTTCAATTTCTCACACACACTCTCTCTCACACACTCACACACACAATTTAAAACACGTTCCTACAGGACGTGAGACACAACAGGAAGTATAAAAACACAAAATTTCTGGCAGAGACGTTCATGTGACGCTGAACACGACTGGACCCACAAACCGTGAGAAACTCGTTCAGTGTCACGCCACATGCTGGGATGAGGACGTCTGGCATGCTCCGACACACACGACACATTTCCCACAATGCAGCACTTCATCAGTTGCTACTAAGAGGGTGAGTCAATACTGGACACGTCTGAACGGAGGGCAAGTGCAGGCAGAAACAGAGCAGAACATTTCTCATCATCTAGTTACATCAGTTAAAAACATCAGGTTCAGCCGAACATCTCAAAACCCTGTGAAAGCAAAGGATTGTGGTCCTGAAGACTTCGACTGGAATACTCAGTTTATAAAAACATCCACAACTAGAGGACGTCTTACCGCCTTCTAGCTTAAAAACATCAGGAAATGTTAAAACGCGCTGCGAGGCGAAGCTACATCGTCCACCGGAGCGCGTGACGCATAAAGTGCGTGGCCGACGCCGTTCAGAGGAAGCTGTCGGTTAGCTTTCGTCTGTGGCCGCCTTCCTGTCAATCACAACTGTCGCTGTGGAGGCCATGCAGAGTCTGCAGTGGGCGTGGTCAGATGGAGTAGGTGGAGCTTTCTGACTGCTGGCGGATGTAGCACTGGAAGCTCTGATCACCGATTGGATGTTCCCTGTAAACACAAACGTGATGCATTGTAACGGAAAAGGGAAGTCTATTTCCTACTTCCTAAAGCTGCTTTGAAATTATGTGTATTGTGAAAAGCGCTTGACTGATCAGTGATACTTACTGGCTTCCATACTTGGTTTTCCTGAACTTGTCGCGTTTGTACTGCATGTGCTGCTGCTCCAGTGTCTGTACGGCTGAGATGACGAGTCTCAGGGTTTTATACGTCTCCTGCGGGTCGTCGATCACAAATGTGGAGTATTCCTCCTGCTCCGGGCCGTCGTACACCGACTTACTGCCACACGCCTCTGGATGGAGAGAAGAGACGCGTTACAGCACTGATGCATCACGTTTGCAACCTCATCATGCTGATTCTAACTGTAGAGTAGACATGAGGGTCATGGGTTCGATTCCTAGGGAATGCATGTACTGATAAAAATATAGCTGCAAGCAGCCATTAAGGGGCACGATAAGTCATGCCAGGATGGCTGGGAGCGTCAGACCAACTGCATCAATGAGCAATTAAAGACATATTAAGATGACTGTACGCAAAATGGCTGAAAAAGCATAAATACTCCTTCAGGGCATCGTGCCGATGACCCATACTGAGTTACGTAACGACATGGTCATATTTCTCCAAATGGCCGATGCAAACTTATTTTGTGCATTAATTTGCACATTATTCGAGAACTGTTTGACAAATCGACTTGAATTCCATAACTTTTTGTTGCCATGGTTTGGTTCAATTTTCATGAAAATTGGATAAAGTGTCTAGGAGGAGTTTGAAAAAGTAGGTTTTGTGGAAAAATCAAAATGGCCGATATGGGAAAAGCTGGATATCATTCGACACGGCATGATGCCCTGAATATAACAACCACTTTTATGATTTTTGGGCAAACCATTCAGATGTTATAAGCAAAAATAGCCATTTTTCGTATCTCCGGACCAGTAGGTGGCGCTGTGCTGAAATGCAGCATGTAGCCTCAGATTATACTTGTGATGACATGGACCAAGTTTGGTCTGAATACGATAAAGCGTTGCGGAGATACAGCCTTATGTCTATTTCCGCAAACTTATTATGCACATTAATTTGCGCATTCTTCAAGAACGGTTTGACAAATCGACTTGAATTCCATAACTCTTTGTCAGCATGGTCTGAAGATGATCTGGTATAGATCTGGAATGCAATTGAATCGGCTTGAGCCACGGAATAAGAGAAAATGAGAATTTTGTTGCTAGCCCTTACGGTTCAAACGTTATTAGCATAAACATGAGTGAAACTTTGCACAGGTGGTGGCGCTAGAGGGATTGAGAGACTCCAAATTATTAGGATGATTGTAGGCAAAATGGCTGAAAAAGCATAAATACTCCTTTGTCGAGCTGATACTGAGTTTCGTAATGATATGCTCATGTGTTCGTAAAAGACAGCATTTTACTACAAAATTCAAAATGGCTGATATGGGAAAATTGGATATCATTTGACTTGGCATGATGCTCCAAATATAATGAGACCACTATTATGATTTTTGGTCAAATCATTCAGAAGTTATAAGCAAAAATAAAAAAAATTTGTATCTCCGGACCAGTAGGTGGTGCTGTGGTGAAATGCAGCATATAACCTCAGGTCATGCTTGTGATGACAAGGACCAAGTATGGTCTGAATACGGTAAAGCGTTGCGGAGATACAACCTTGCGTCTATTTTTAATTAATTAATTTGTGCAATATTCAAGAAAGGTTTGACATTTTGTCGACATGGTCTGAAGATGGTTCAATTTTCATGAAAATCAGACAAAGCGTCTAGGAGGAGTCCGAAAAAGTAGGTTTTTCGAAAAATTCAAAATGGCCGATATGGGAAAATTGGATATCATTCCATAGGCATGTCATTTTTCTTATCTCTGGACCAGTAGGTGGCGCTGTGGCAAAACGCAGCATGTAACCTCAGGTCATGCTTGTGATGACATGGACCAAGTTTGAAGTCTGAATACGATAAAGTGTTGCGGAGATACAGCCTTATGTCTATTTTCGCAAAATTCTTCTGCGCGTTATTCAAGAACGGTTTGACAAGTCGACTTAAACTCCATAACTTTTTGTCGCCATGGTCTGAAGAAGATCTGGTTCAATTTTCGTGAAATTCAGACAAAGCATCTAGGAGGAGTTCGAAAAAGTTTTTTTTTTTCGGAAAATTCAAAATGGCGAAACAAATTTCGTAACAGAATTTTGTTTCTAGCCCTTACGGTTCAAATGTTATTAGCATAAACATGAGTGAAACTTTGGACAGGTGGTGGCGCTAGAGGGATTGAGTTAGAGACTCCAAAATTGGTGTGGTTAATATTGGGACTCTCAGTGTGCCAAATTTCATAACCTTCCTGCAAGCGGTTCTATGGGCTTCCATAGACTCCCAGAGCGGAGGAAGAAGAATAATAAGAACGCCAGCGATCACAATACGCCTCACCTTCAGTTCCTGACCCCTAATGAATGAATGTTTAATGTGAATGCTTTGGATAAAAGTGTCTTCAGCATGCATGAACGTCAACGTGACGGATCATGTGTGTATAGTGTGTGTTGTCTCTCGCTCACCCTGCATCTTCACGAGTTTGGACATGTAGGTGCTGTAGAGCGAGTAGATCCTCTCCGTCTCTCGGTCTCCATCCACGTCCAGCTGGATGTTGGCAGGAAGTCCCCTGAGAGACAGAACACAGACATGATGACATCACAGGGTCAAACATTAGAAGTATTTTCCAGCATGTTTCGGCTGTTTTTTTTTTTAAATTATTAAAGTACCCCTATTATGCTATTTTAAAGTTGCTCATTTTGTTTTAGAGTCTCCTGCGACAGGTTTACACGCATTCAAGTTCAAAAATCACAAATTTTCCCATAATATCCATCAGCTCTTTTCTCTCAGTGTCTGAAACGCTTCGATCAAGGATTCGGTCTCTCTGAGCCCCGCCTTTCTGAGAGCTGCTCTGCTCTGAGTGGTCAGAAACCAAATGCTCATTATCATATCTGAATCTTAGCTCTTGATTCACAGTGATATGAACAGTAACGATGGCGTGGGTTTTACCGTATCAATCTCATCAAAGTGGATTTGCTTTGGCAGCAGAAAACAGCGTCTTCGACCAACACGAACCAAACTCTTCCAGTCTCAGATACAACTACAGTGATTGAGGGCGGGGCAAAGAGACGCTGTTCACCTGCTTTATGCAAATTAGTTACAAACCTACATAATCTTGAGACTCGAAATACTGACGACGCATTTGCTTCTTTCTTTTAGGGAAACAAAAACAGGATTCTGGACTCACCCCGTGCAGGGCGTACAGCCGGGCGCCGCATCCGCCGACAGCTTGCAGCAGAGCCAGTGTCCATTGAGGTAGGCCGACGGGTGGTACGTGCTCAGACGCTTGCGGTTACACTGACTGACCTTGGTCAGGATGTCGATCCAGTCGCGGGCCTCCACGCAGTTATTGGCCTGGATGTAGAGCGCCCTCTCTGGCTGGATGACCTGGAACATCTGGAGGAACAACAAGAATCACAGATGCTGCATACACACAAATCAAATCTTAATCTGAAAGAGTTCCTCTTACATTCTTCATTTTAAAGGACTCTTCCTCTAGTCTCTCCACAGCCAGGATGTTTTCTATAGGGATGCTGCACAGAGCGCCCTCTCCTGGACACAACAACAGACACACATCAGCACTGAAGAACACACGAAACTCATCAATGACCAACACAAACTGGACTGGATGGATGGATGGATTTATAAACGGTGTACAGACAGGAAAATCTTTGAATTATTAGTGTGTGCCAGTGTTTTCTGCTTCATATTTTTGTGGAAACCGTGATGCATTTTATTTTTCAAGATGTTTTGATGAGTAGGAAGTTCAAAAGAACAGCATTTATTTAAAATAAAATCTTTTGTAACATTATAAATGTCTTTACTGTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468704 True 6168 lncRNA 0.40 1 6093291 6099458

Neighbor

gene id symbol gene type direction distance location
CI01000299_06037407_06054548 TPP2 coding downstream 38743 6036217 ~ 6054548 (-)
CI01000299_05974659_05985294 NA coding downstream 107685 5974391 ~ 5985606 (-)
CI01000299_05946615_05949088 NA coding downstream 144057 5946333 ~ 5949234 (-)
CI01000299_05927821_05933216 BLZF1 coding downstream 158459 5927314 ~ 5934832 (-)
CI01000299_05919510_05924061 TXNL4B, TXNL4B.S coding downstream 168663 5919128 ~ 5924628 (-)
CI01000299_06130943_06144384 NA coding upstream 29615 6129073 ~ 6144868 (-)
CI01000299_06145156_06154533 NA coding upstream 45497 6144955 ~ 6154533 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding upstream 86030 6185488 ~ 6195015 (-)
CI01000299_06197276_06199730 TFDP1 coding upstream 97148 6196606 ~ 6199730 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 109154 6208612 ~ 6214104 (-)
G407949 NA non-coding downstream 1410 6091491 ~ 6091881 (-)
G407967 NA non-coding downstream 4565 6088502 ~ 6088726 (-)
G407829 NA non-coding downstream 5070 6087164 ~ 6088221 (-)
G407810 NA non-coding downstream 62306 6030276 ~ 6030985 (-)
G407885 NA non-coding downstream 66966 6026115 ~ 6026325 (-)
G407912 NA non-coding upstream 390 6099848 ~ 6107253 (-)
G407895 NA non-coding upstream 9020 6108478 ~ 6114490 (-)
G407971 NA non-coding upstream 46039 6145497 ~ 6145924 (-)
G407975 NA non-coding upstream 83677 6183135 ~ 6183535 (-)
G407923 NA non-coding upstream 121308 6220766 ~ 6222379 (-)
G407805 NA other downstream 257302 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 637183 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1164473 4913373 ~ 4927715 (-)
G407413 NA other downstream 1542570 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 432543 6526127 ~ 6532048 (-)

Expression


Co-expression Network