G407895


Basic Information

Item Value
gene id G407895
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6108478 ~ 6114490 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468684
TGCATTTCATTTTCTTCTTTTATTTATTGAATTTTTGCATTAATGCGGCACTAGTGTTCAGTATCCACCTAAACATATTCACATCAAATTAAAATTAGTGTTATATACAAGATAAAAACTGACGGCTCTATACTGAGAGAAAAAACCTGATTAACGACAGACACAACGGACACGTCAGGAATAAAAATACTAAAACCATCAGGATGAAAGTCTGTCACATGTTTAAATAGAGGCTCTTTCACAATTTCACAGGTTAGGATCAATTAAAACACTCATTTAAAACAAAAGAAACATCATGCTTTCTCCGTCCCTGTTGAACCCAGAACCAGGGCGGATTTCATGTCTGATGGGAACTTTAGACCAAGGCAGCGTGTCACGTGTCTCCTGTGATGTCACTTCCTGTCTACTGCAGCTGGGATTCGCTGGACGACGTGTCCGGGGCATCAACAGGAGGGCAGGAGTGAGACTTGATGCTGTTGTCTTTACTAACAGCCTCGTCGAAGTCCAGCTGCTGTCCGTCCACACGGATCTCCAGACAGCCGTGGTAGAACGCTGAGATGGGAGTGATGGACAGTGGGAGATCTGCACACATACAGAGAAAATATGAATGATTTATCGGTGCACATCATTATGGTGTTAAATTCATAATCTTGAATCAGAATATCTTCTCCTCCCTCTTGCAGCATCTCTTCTCTTCTCTGATGATGAGGGCGGGGCAACCTGTCACTCACATGAGATCCACCAATAGCAAACCACAACCATCCAATCAATTCCCCACAGACAAAATCAAGCCCCGCCCTACATTTGTTCTTGTTTGAGAAGCGTTTCACTCGGATATACGACACAATAGAGAAGAATTCTGCAACTGACAGACATTCGACTGGATTTACCAACCTCATCTTCACCTGATGTTCAGAATGGACGTACAGTCTGATGTTAGCGCTTTAAAACCATTATAAGACACCATTATTGATAAATGTATTGATTTAAAGTCAAGATTAAGACGATTAGACGTCAGGAACTGAAGGAGTGTTGGCATCAGAGCGAATCTGCAGAGATGCTGACATTAACTTTACCAGTTCTGAAGCCTGAAGATTAGAGACCAGTGTTATTTCAGTATGACTGAGATACTATTATAGGTTTTATTAATACTCTTAATTGGTTTTCAAGATTTTCTGGTTTTCATTTTAAAGGGGTCATGACATGAGAAATCAGATTTGAGGATTGTCAGACTAACGTTTATGATTGCTGTCAAATGCTGTGAATGGTCTAATATTTTTTCCAAAATATCGCTCGGACAGAAACGCTCCTTTTTTAGCAATCAAGCTTTCCGGGGTCAACTTGCAGGAATCAAATCCATGACCTTGGTGTTGCAAGCACCATGGAAAAGCATGGATTTATCAATATATTAGTGAGCATCTATTGGCAAGTTATCTTTATAAACAGAAATCTGCTCAGTCGGGTTAAAAATGAAGTAAAGAAGCTCACTGACCTGGAAGTCCTCCTATGTAAGTGTCGACGGGTCCCTGCATGGCGCGGTCGAGTTTAGCTAAAGCCTCGCTCAGGGTCTCCGGGTCGCTGTAGGTCACGTTCGAGGAGTTCGCTGTGATGTGGAGTCCATCGGCTGACGCTCTCATCTCCACCACCATCCGATCCGGATAACACAACATCAGAGACTGCAGCGTCGCCACGCAGACGCCGTCCACGAACACCTGCAGGTCCTGGAACACAAGAGAGCATGTATAGCATGTGCTGGAGACTTCAACAGGACGTGATGTCAGCGGAGCAGCTTACCGCATCATCGGTTTCCCGTGTTACCACGGCAACGGACAGAGGGACCGTGTTGTTGGTAACCAAGGCGAATAATACACCGGTGGTGCTGGACGGACGTATGCTCATCACGACATCCACCTTCCACTGTCCGCTTCTGCCTGTGACGTTGTAGTTGATGTTGAAGAGCGCCTGACCTCCACCGCTGAAGAACGAGCCCTTCTCCACATACACGTAACAGTGCTTGCTCTCCTTCTCGTGAATCACCTCCTTCACTCCAGACCCGCCCTGATTCATCAGATTCCAGCCGCGGATGCAGCCGTCCAGCCTCGGGTTGATCTGATCCACATCCACACAAACAACGATAAACAAAACACTATCACACGCACAATGGCCACATCAACACCACAAGACCTATCAGGAACTTGTCCAAGTCATATTTCACCACAGAAATCATGATAAACAAACAAGAAATTATATTCTCTTTGCCGCTTTAAGACGAATCGCTTGTTGTATTACTCATTTGTAAGTCACTGTGGAAAAAAGCATCTGCTAAATCAACAAATGTCAATGTAAAGTGTATTCGGTAACACTTTATTAAAGCCCTCATATATAATGCATTATGAAAGTATTTTTAATGGATTAATTACACACCTTATAATGCATTATATGATCTCATGAATAATTGTAACCACAGTTATAATATATCATAATTCTTCATTGAACACATTTTTAGAACATATAATACTTTAAAACACACGACAAACAACCAATTTCAGATGTAACAAGGAATCTGCAAATATTATAAAAGCATTTTAACTTTGGTTACCATTTTTTATAATAAAGATAAATATAATGCATTATGATGTACATTATGAATACTAATGCGTTAAAGGCTTTAAGTAAAGAGTTACACATTTTTTGTATTATTTTCACGTCAATGAATCACATTTTTCACTAAATCCTGAGCAAACCCTTATTAATGCAACGCAAAAAAATTATTTATAATTATAAATTCCATTAGTAAAGCGCAATTATAATTTGTTATTATAAGTTAGATGAAAAAATTTTCCTTTTGATTTTTGAAGTTTGTGAACGGAATGCATTAATGTGTAATTACACAGCTCTGACTGTAGGGGTGTCAGTGAACACTTGCCGGTTTGATGAGGCTCTCGTTGCGGTTGGGCAGACCGGCGATGTAAACCTTCGTCTCCAGTTTGTCGTTGACGGGTGTGAAGAGACGCTCAGGACTGTTGATGCTCATGACGGCCTCTTTACTGATCTTCACACTGACGCTTCCCATCAGCTCCTCCACCGAGATCTACAGAACCATACAGAACAAACATCACCTGACTATGTACATACACTATTGTTATAATTAGTGTATGTATCATTTTTTATTAGGGGTGTGACAAAACATGACAGCGTCTCAGCAGCTCGGCTAACAAACTCCATCTCTGAATATGCTGTGAGTTTGGGTTGCTTACAACGTTCGTTAATCATTTATAAACCGACACCAACACATGAGAATATATCAGTGTGTTTCTAAATATGTGAACTGTTGTTCATCATGATTTCAAAATAAAAGTTTAACCCCTCGCTCTGAGTTTGCATGTTTTGATGTACATGTTTTTTTATTGTTAAGCATTTCTATTGTTAAGAAGTGGCCAAATATTAAAGAATAAGGGGACATTTGAATTACATGTTGTTTTGCCAATATTAAACAAGGATTTGATCATGCTGTAAAGTGTAACAACAACAATCATCAGGCTGTTGGCGCCCTCTGCAGGCATTTGTTAAAATATGTAATGTACATAAGCTGATTATGTTCATAGTATATTACATTATGTATTTTAACAGTTGTTCAATAACACCATATGATTACTTGCTTTTGATACTTTATGTGAACCAATTATTATTGCCTCACTGTTATTATATATGTATTTTAAGTCATTTTAAAGGTCATTGTTCGACTTAGGTCTATTTTAATTACTGCAAAAAAATCAGATTAATCACCAAAATAATCAACCGATCACTCAATTACCAAAATAATCGTTAGTCACAGAACCTAGATTAGTTAAAACATTTCAAAATGCACCTGTTTGTATCCGATTAATTGACAAAATAATTGGCCGATAATAATCGTTAATCGAAATGAGCGTTTCCTGAAGGAAAGGGAATGTTTGTGCAGAATAATGTGAAAGTTCAGACAGTAAATCAGACAGCAGAACCCTGATGATGATGTCCTGTATATAATCTATGATCAGTGTGTCATGAACGCACCACGTGCCACTGTCCGTCATTGATGGCTTTTCCTCCGCTGGTCATTTTCACGGAGTGTTCGTTCTTGAACTGGACCTCGATGCGGCCGCTCCGTAAACCCAGCATGAACCACGAGTCCGGCGAAGACTCTGCGTACAGAATCACTCCCTCCGGATCAAACGTGCGGAAATCAAATTCAGCTGCAAACCTGCGTGAAAAATGTTTTCCAGTAGTTGGCGATAACAACACCGGAATACTCACGAGGGATCAGTTTCTCGTCTTTTTCTCAGAATAAATAACAGAAAATGATGCTCAGGAAGTCAATGTAAACATTCGATGTCATCAGGAAAATACACACCAGCAGTTAACCCTGCTCAGATCGTGTCATGATCCCGGCGACAGTCGTACCTGGTGTCGGCCTGCAGACGGAAGCGCAGGTAAATGACGGGTAATCCGGAGAACTGCTCTCCCAGATACAGCATCTCCTCGTGCTTGTGGTCGTACAGATCCAGACACTGCGGGATCTTCTCACAGAGGTGCCCGTCCTCCGCCAGCTTCACACCCATCCGTCCGTCGCAGTGACACGAGAAGCTGCCGATGGTGTTCACACACTCGCCGCCGCACACGTCCAGCTCACACTCGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468684 True 4677 lncRNA 0.41 2 6108478 6114490

Neighbor

gene id symbol gene type direction distance location
CI01000299_06037407_06054548 TPP2 coding downstream 53930 6036217 ~ 6054548 (-)
CI01000299_05974659_05985294 NA coding downstream 122872 5974391 ~ 5985606 (-)
CI01000299_05946615_05949088 NA coding downstream 159244 5946333 ~ 5949234 (-)
CI01000299_05927821_05933216 BLZF1 coding downstream 173646 5927314 ~ 5934832 (-)
CI01000299_05919510_05924061 TXNL4B, TXNL4B.S coding downstream 183850 5919128 ~ 5924628 (-)
CI01000299_06130943_06144384 NA coding upstream 14583 6129073 ~ 6144868 (-)
CI01000299_06145156_06154533 NA coding upstream 30465 6144955 ~ 6154533 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding upstream 70998 6185488 ~ 6195015 (-)
CI01000299_06197276_06199730 TFDP1 coding upstream 82116 6196606 ~ 6199730 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 94122 6208612 ~ 6214104 (-)
G407912 NA non-coding downstream 1225 6099848 ~ 6107253 (-)
G407909 NA non-coding downstream 9020 6093291 ~ 6099458 (-)
G407949 NA non-coding downstream 16597 6091491 ~ 6091881 (-)
G407967 NA non-coding downstream 19752 6088502 ~ 6088726 (-)
G407829 NA non-coding downstream 20257 6087164 ~ 6088221 (-)
G407971 NA non-coding upstream 31007 6145497 ~ 6145924 (-)
G407975 NA non-coding upstream 68645 6183135 ~ 6183535 (-)
G407923 NA non-coding upstream 106276 6220766 ~ 6222379 (-)
G407939 NA non-coding upstream 111922 6226412 ~ 6232275 (-)
G407986 NA non-coding upstream 274886 6389376 ~ 6389644 (-)
G407805 NA other downstream 272489 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 652370 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1179660 4913373 ~ 4927715 (-)
G407413 NA other downstream 1557757 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 417511 6526127 ~ 6532048 (-)

Expression


Co-expression Network