CI01000300_00226653_00303160


Basic Information

Item Value
gene id CI01000300_00226653_00303160
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 226653 ~ 303160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00226653_00303160.mRNA
TGGTTTGAGCGAGTCAGCATGCTGGTGATTCTGCTCAACTGCATCACACTCGGCATGTTCCAGCCCTGCCAAGACCTGGAGTGCCACTCTGACAGGTGCAGCATACTGCAGGCCTTCGATGACTTCATCTTTGCATTCTTTGCTGTGGAGATGGTGTTAAAAATGGTGGCCTTGGGGGTATTTGGTCCGAAATGTTACCTTGGTGACACCTGGAACCGCCTTGACCTCTTCATCGTCATGGCTGGGATGTTGGAGTATTCTTTAGATGGTCATAATGTTAGTTTCTCAGCCATCAGAACCGTACGGGTTCTCCGACCTTTACGAGCCATCAACAGAGTTCCCAGTATGCGAATCCTGGTGACATTGCTGTTGGATACTTTACCGATGCTGGGAAACGTCTTGCTGCTTTGTTTCTTTGTGTTCTTCATCTTCGGGATTGTCGGCGTGCAGCTGTGGGCAGGGCTTCTCCGGAACCGCTGCTTCTTTGACAGCAATGTCAGAAAGCTGTATAATGTTTCAGAGTCTGTGAGCGAATACTACAAACTGGAAGAAACAGACGACATCCCCTTCATTTGCTCCACCACTCGGGAGAACGGAATGTTGCACTGCTACAATATCCCCAAACGCAGAGTAGGAGGGGCTGATTGTGAACTCACACCTACTGATGTCACAGATCTTGTTTATAAAGAGCCTCCTCATCATGGATGTGTAAACTGGAACTTGTATTACAACAGCTGCGAAGCAAGCGAACACAATCCCCATAATGGGGCTATCAACTTTGACAACATTGGATATGCATGGATTGCTATCTTTCAGGTCATCACCTTAGAGGGATGGGTGGATATCATGTACTATGTCATGGATGCACATTCCTTTTACAACTTCATCTATTTCATCTTCCTTATCATCGTAGGCTCCTTCTTCATGATCAACCTGTGCCTGGTCGTCATAGCAACGCAGTTCTCCGAGACCAAACAACGTGAGAACCAGCTGATGAAGGAGCAGCGAGCACGTTTCCGCAGTAATGAATCCACCTTAGGTAGCTTGGCCGAACCAGGATCCTGCTACGAAGAAATGCTGAAATATCTTGCACACATTTGCCGTAAACTTTTTCGTCATGCTGCGCGCCTCTATGGCGAATTATGCCCCAAGAGACGCAAGGGTGTGGCCAATCCCAGCAGCTCCCTCTCAGTGGGTGGGACTAATGGATATTGGAGTGACAATGGAACAAAGATGGGTCCGACCCAATACTGTATGCTGCATTACCATCACCCCCATCAGCATCAACATTACCTCAGCAATGGCATAGAAATGAAAACCCTTCATCTTGACAGAGATGCTCAAAATTCCAAAAAGACCCCATCACTCCCACTTGCACTACAAAATTTAAAGGGTTTGAGGCTTGGTATGAACTATCCCACCATCCTGCCCTCCAAAATGTACACAAACTCACACACTCGCTCACACTCGACCAGTGGAGTCAAAGCACCAACTTTCCATCATGGACACTATGGCAGGAAGATCTCTGTTTGTAGTGGATACCATGATACTTACAAGTTGCAGCACGGTGTGTATCCGGGCACAGGCTTGAGTGTGTGTGCGGACAGCAGGGTGGGGCTGGTGTCTTCAGAGTCATCCTCCTGCCCAATTTGTGCCCAGGAAAGCGACGGTGTTAATTGCGACTCCAACGGTGAATCGGACCCAGAGAAGCAGGGGCCAGATGTCAGCTCAGAAGAGAGCAAAAGACACCAAGATATGGAAGAAAAGGAGTCTAGGAATGAGAACTGTGTGTGTATGTGCCTTCATTATACCAGAGCCATTTTGAGGCGGATTGTGGACAGCAAGTACTTCAACAGAGGGATAATGATAGCAATCCTTATCAATACACTCAGCATGGGTGTGGAGTACCATGAACAGCCGGATGAGTTGACAGACGTGCTGGAGATCAGTAATATTGTCTTCACTAGTTTGTTTGCGTTAGAGATGCTCCTGAAGCTTTCGGCCTGCGGTCTGTTCAACTACATCAGTAACCCCTACAACATCTTTGATGGGATTATCGTTATCATCAGTGTGTGTGAGATTGTTGGACAAGCGGACGGAGGGTTTTCGGTTTTGCGGACGTTCCGTTTGCTCAGGGTACTAAAGCTGGTGCGGTTCCTCCCCGCTCTGCGCAGGCAGCTGGTTGTACTGATGAAGACCATGGACAATGTGGCCACCTTCTGTATGCTGCTGATGCTCTTCATCTTCATCTTTAGTATATTGGGAATGCATCTGTTTGGGTGTAAGTTTACTCTACGTTTGGAGAATGGAGACACAGTGTCTGATAGGAAGAACTTTGACTCACTCCTCTGGGCCATCGTTACAGTGTTTCAGATTTTGACCCAGGAGGACTGGAATGTGGTTCTGTATAACGGCATGGCCTCCACCTCCCCCTGGGCGTCTCTGTACTTTGTGGCCTTGATGACCTTTGGGAATTACGTCCTCTTCAACTTACTGGTTGCCATCTTAGTAGAGGGCTTCCAAGCTGAGGGTGATGCTAGCAGATCAGACACTGATGATGACATGTCGTCTGACTATGGTGATGAGGACAAACTGCGAGAACTACTGAAATCAGGTGTGTGTGTGTGTGTGTGTGCGCAGCTGTTTATATGTGTTTTGTTATTTTATGCTAATCTCTTGTTGATATTAGGATCAGAGATAAAAATGCAGACATTAATGCCCATCTCCAATGGACACCTGGAACCTCGGGCGTCTATGCCACCTCACAACACACACATGCAACTCAACGCCACACCCAGAACTGAGGTGTCGCACATCTACAGCCAATCACGGCGTAACAGCAACACCTCCACCGAACCACATGACCAGAGGTCCCTGGTGAGTAGTAAATGCCACCTTTGGGGAAGTCGCCGCTCCAGTTGGAACAGCCTTGGCCACGCCCCCAGCCTAATAAGACGTGCTCAGTCAGGGGAGCGCGAGTCGCTGCTTTCTGGAACGGGACAGGACAGCATGGATGAAAACCAATCAGATGATGGGAAATCCAGCAGGACCGGCAGTCTGGGTGGAGTTTCATGTCTAGGGTCGTTTGATTTACCAGAGCTCTTGCAGGTTCCACGCCCATATTTGGAGTGTAATGGCAGATTAGATGGAGGTTATCCATCCTCTCCAAACATTACACACCCCGAGCCAACATCCACACAAGGGGCAGATGATGATGAATTTGAGGAGAGCTGGTGTCTCATTGTGAAGAGACTGTTGGAGCCGTATAAGCCCCAATGGTGCAGTGACCATGAGGATTGGTCACTTTACTTATTTTCCCCTCATAATAAGTTCCGTATGCGCTGTCAGAAAGTCATTACTCATAAGATGTTTGATCATATTGTGCTGTTCTTCATCTTCTTCAACTGCATCACAATCGCTCTAGAGAGACCTGACATCCAGCCCGACAGCACGGAGCGGATTTTTCTTAAAGTGTCCAACTACATCTTCACTGTGATCTTTGTGGCTGAGATGACTGTGAAGGTGGTTTCTCTTGGGCTGTATGCTGGTCCAGGCTCGTACCTGAAGAGCAGCTGGAATGTTCTAGACGGCCTGCTAGTGTTTGTGTCTATCGTGGACATCCTGGTCTCACTCGCCTCCTCTGGCGGGAACAGAATCCTGGGTATATTGCGAGTACTTCGACTGCTCAGAACACTGAGACCCTTAAGGGTCATAAGCAGGGCCCCTGGACTGAAGCTGGTTGTTGAAACGTTGATCACATCTCTCAGACCTATTGGAAATATTGTGTTGATCTGTTGCGCTTTCTTCATTGTCTTTGGCATTCTGGGAGTTCAGCTCTTTAAGGGGAAGTTTTATCATTGTGAAGGCTTTGACACTAAAAACATCACCAATAAATCAGAGTGCCTGCATGCTAACTACAAATGGGTTCGTAGGAAGTACAACTTCGATAACCTGGGTCAGGCACTGATGTCATTATTTGTCCTGTCATCTAAAGACGGCTGGGTCAACATCATGTACGATGGCTTAGATGCCGTGGCTCCTGTAAGGAATCATAATCCCTGGATGCTTCTGTACTTCATCTCCTTCCTGCTGATCGTCAGCTTCTTCGTGCTCAACATGTTTGTAGGTGTGGTGGTCGAGAACTTTCACAAGTGTAGACAAGACCAGGAGGAAGAGGAGGCCAGACTGAGAGAGGAAAAGAGAAAGAAGCGCATGGAGAAGAAACGCAGGAAGGCCCTGCAGAGACCGTACTATGCAGACTACTCTCCAACACGCCTCTATATTCACACGCTCTGCACTAGTCATTATCTGGACCTCTTCATCACCATCATCATCGCCATTAATGTCCTCACAATGTCAATGGAGCACTACAGACAACCCAAGTATCTTGATGAAGGTCTGAAGTACTGTAACTATATCTTCACGCTGGTCTTTGTGTTCGAGGCTTTGCTGAAACTGGTTGCCTTTGGATTTAGGAGATTTTTCAAAGAGAGGTGGAATCAGTTAGACTTGGCAATTGTTCTTCTCTCTATCATGGGCATCACACTTGAGGAAATTGACCTGAATGCCTCTCTACCCATCAACCCAACTATCATACGCATCATGAGAGTGCTACGCATTGCCAGAGTGTTGAAGCTGTTGAAGATGGCAACAGGAATGAGATCTCTTCTGGATACAGTAGTTCAAGCTTTACCACAGGTTGGTAATCTGGGTCTGCTTTTTATGCTGCTGTTCTTCATCTATGCGGCACTGGGAGTTGAACTCTTTGGCAAACTTGAATGCACTGAGGAGACCCCGTGTGAGGGTTTGAGCAGACACGCTACATTTCAGAACTTCGGCATGGCATTCCTCACTCTATTCCGCGTTTCCACGGGTGACAACTGGAATGGAATCATGAAGGATACCCTGCGGGAATGTAAAAATGACAAATGTCTGAGTTACCTTCCGCTTTTGTCGCCTCTCTACTTTGTGACATTTGTGCTGATAGCACAGTTTGTGCTGGTGAATGTTGTGGTCGCTGTGCTCATGAAACATTTAGAGGAGAGTAACAAAGATGCCCGTGAGGAGGCCGAGATGGAGGCGGAGTTGAAGGAGGAGCTTCGGGGCAGTCGTAGACAAAGCACCGCCTCTATGGGCGGGGTCATTGCGCTTGAGGGTACAGCTGGCAAAGACCCCAATTACGGCAATTTCCTGACAGTTGGGAGGCCGTCTATATCACGGATGCTGTCCTTACCTAATGATAGTTACATGCTGTACCCTGTTAAGCCTGTATATGGATCCATTCATGAGAGATTCTCCAGACAGGACTCTACACTACCAGCTGTTTGTGTGTTTTCAGGCTCCTCTCTCTCACTCGGCACCCAGCCCTGTGAAGATAATGCCTTAATGCGGGCTCCAGGAACTGCATCTCAGACAAGCCTGGCCTCCATTCCTGCTCCCCACCCTCTAAATCAAAGAGCGAGATCTAGCAATGCCTTCAGGGCTCTGCAGAGACAGCAAGCAATAAAGAGCGACTCCATTGATTCCACAAACGCTGACTCCAGAGACACCTTACATATCCCGAGTAAGCCCTGCTCCAGTGATAATCTTCTTCTCAAAGTACCCATCATGCCCCTCACCAGTGGATCTGCCCCCTGTTCCCCCCAGGCCTCGCCTCCCCCTCCCCTCCGCAGCCGGACAGCGAGCGTACAAACAAACAGACACGTGTACAGCCAGCGCAGCATCCCCTGCCGACAGACCGCACACCATACGCAATCCATAAAATCTCTTGAAATAATGCACGCACATGCACACACCAAACTACGGGATTCAGACGGTCCTGACGAGGTGGTCCGACTCAACGCGAACATCACCCAAAGAAGAGCCTCTCGGTGTGGAGGACACAGCCACAGTTTGTCCCCTTGCGACCCACCTTTCTGTTCTGACAGCCAGTCTCAGGACTCATTGCACAGTGGGGCAGCCTGTCAACCGGAAACCAGCGCTCATGGTCTGCGGAAGTACAACAGTATGGAAAATAATGGCTTCCTGTCTCAGCTTCACATCCCTCGCCGCCACTCAACACATGGAGAGGAGTTACTTCTTCAGCAGCAGACAATTTCACCATCACCTGGACCTTCTCCAACACCCAAGAAGGAGAAAATGAGCCCGCCGTGCATCTCCATCGACCCTCCCACCGATGCAGAGTTTCCGTGTCCAGGGGTCAGCCAGGAGCGCAGCACAGTCCTAAGGCGGCGGACCCCGTCGTTTGACTCCGCACTACCACGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00226653_00303160.mRNA True 6267 mRNA 0.49 32 226653 303160

Neighbor

gene id symbol gene type direction distance location
CI01000300_00180177_00181561 NA coding upstream 45036 180120 ~ 181617 (+)
CI01000300_00150486_00160308 NA coding upstream 66138 150486 ~ 160515 (+)
CI01000300_00103395_00123529 SLC5A10 coding upstream 103124 103395 ~ 123529 (+)
CI01000300_00003224_00007587 NA coding upstream 218619 3224 ~ 8034 (+)
CI01000300_00313257_00313598 NA coding downstream 10097 313257 ~ 313641 (+)
CI01000300_00324861_00371897 NA coding downstream 21406 324566 ~ 372421 (+)
CI01000300_00373895_00378177 ALKBH5 coding downstream 70735 373895 ~ 378403 (+)
CI01000300_00380880_00388140 MIEF2 coding downstream 77720 380880 ~ 388565 (+)
CI01000300_00390712_00395191 NA coding downstream 87451 390611 ~ 395743 (+)
G408104 NA non-coding upstream 79418 146998 ~ 147235 (+)
G408066 NA non-coding upstream 195387 29140 ~ 31266 (+)
G408059 NA non-coding upstream 208365 17958 ~ 18288 (+)
G408058 NA non-coding upstream 209728 16689 ~ 16925 (+)
G408056 NA non-coding upstream 211484 14895 ~ 15169 (+)
G408171 NA non-coding downstream 17449 320609 ~ 320843 (+)
G408172 NA non-coding downstream 17717 320877 ~ 321076 (+)
G408197 NA non-coding downstream 69740 372900 ~ 373116 (+)
G408141 NA non-coding downstream 138292 441452 ~ 478136 (+)
G408216 NA non-coding downstream 147378 450538 ~ 461022 (+)
G408510 NA other downstream 673440 976600 ~ 977099 (+)
G408498 NA other downstream 713907 1017067 ~ 1020734 (+)
G408910 NA other downstream 1329870 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1446740 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 2010249 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018502 cacna1h,LOC108430011 coding CM030135.1 CM030135.1 12836224 ~ 12878881 (+)