CI01000300_00373895_00378177 (ALKBH5)


Basic Information

Item Value
gene id CI01000300_00373895_00378177
gene name ALKBH5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 373895 ~ 378403 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00373895_00378177.mRNA
ATGGCCGGTTTTACGGATTTGCGGGAAAAGCTGAAGTCGATGACACCGCACAGGGACACAGTTTTCGAGCACAGCAACGGCGAGAAGCGCAAATACCGCGAGTCGGATGACGATGAGAGCGAGTACGAGGAGCGGCGGGACGCGGAGGCGCGCAAAGTGAAGAGCGGCATTAAGCAAGCGAGTATTTTCACGCAGGAGGAGTGCGCGCTTATCGAGGCAAAGATAGATGAGGTGGTTGCCAAGGGGGACAAGGGGCTCTACCGGGAGCACACGGTGGACCGGGCGCCCCTGCGGAACAAGTACTTCTTCGGAGAGGGCTACACATACGGCTCGCAGCTTGAGAAGCGCGGCCCCGGGCAGGAGCGGCTGTACTCCAAAGGCGAGGTGGACGAGATCCCGGACTGGGTGCACGAGCTGGTCATCGATCGCCTCGTGACGCACGGCGTCATACCGGAGGGCTTCGTTAATAGCGCCGTGATCAATGACTACCAACCCGGGGGCTGCATCGTGTCCCACGTGGACCCCATCCACATTTTCGAGCGGCCGATTGTGTCCGTGTCGTTCTTCAGCGATAGCGCGCTCTGCTTCGGCTGTAAGTTCCAGTTCAAGCCCATCCGCGTGTCCGAGCCCGTGCTCTACCTGCCCGTGAGGCGCGGCAGCGTCACCGTCCTCAGAACAAGGCCGGATGCCCCTCGCTTAGACTCCAATTCACGGAGCCCATCCATCCACTCTTCTGAGAGAAGACACATACTCAAAGCCAAACGCTCACACCGCAAGGCTGACCCAGATGCTGCACACAGGCCTCGTATTTTAGAGATGGACAAAGAGCTGCAGAGGCGTTCCCTCTCCTCCCGACAGAGACGTCACGGCGACAGCAGTTCAGAGAACTCCTGGAGGAGAGCTGAAGATAGAGAGCCGGGCTCCCGCTACACACACGACCACGCACCCACGCGACGAGTCAAAATGAGACGTCATTGAGACGCGATCAGAACTCACTGCTTCTCTCCTCTGACGTCTTTTCGTTTGCTCAAGGAGATGGAAAGCGAACAGAGTGACTCAGTAGAAGAGATGCTTCTGGAGTGGGTGGCCTCAAGGACGTTTGACGCTGGCTGCTTTACTTATTAAAAGGCTTGATCTATCTATTCAGACATATCAGACAGATCCACTATATTTTGTTCTGTGTGATTTAAAGGAAATGTATGGA

Function

symbol description
alkbh5 Enables oxidative RNA demethylase activity. Predicted to be involved in several processes, including RNA metabolic process; mRNA export from nucleus; and response to hypoxia. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase).

GO:

id name namespace
GO:0000907 sulfonate dioxygenase activity molecular_function

KEGG:

id description
K10767 ALKBH5; mRNA N6-methyladenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00373895_00378177.mRNA True 1204 mRNA 0.56 3 373895 378403

Neighbor

gene id symbol gene type direction distance location
CI01000300_00324861_00371897 NA coding upstream 1474 324566 ~ 372421 (+)
CI01000300_00313257_00313598 NA coding upstream 60254 313257 ~ 313641 (+)
CI01000300_00226653_00303160 NA coding upstream 70735 226653 ~ 303160 (+)
CI01000300_00180177_00181561 NA coding upstream 192278 180120 ~ 181617 (+)
CI01000300_00150486_00160308 NA coding upstream 213380 150486 ~ 160515 (+)
CI01000300_00380880_00388140 MIEF2 coding downstream 2477 380880 ~ 388565 (+)
CI01000300_00390712_00395191 NA coding downstream 12208 390611 ~ 395743 (+)
CI01000300_00422911_00432735 NA coding downstream 44188 422591 ~ 432772 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding downstream 107491 485894 ~ 492836 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding downstream 130073 508476 ~ 514751 (+)
G408197 NA non-coding upstream 779 372900 ~ 373116 (+)
G408172 NA non-coding upstream 52819 320877 ~ 321076 (+)
G408171 NA non-coding upstream 53052 320609 ~ 320843 (+)
G408166 NA non-coding upstream 78921 294550 ~ 294974 (+)
G408163 NA non-coding upstream 84932 288654 ~ 288963 (+)
G408141 NA non-coding downstream 63049 441452 ~ 478136 (+)
G408216 NA non-coding downstream 72135 450538 ~ 461022 (+)
G408235 NA non-coding downstream 164846 543249 ~ 543488 (+)
G408238 NA non-coding downstream 172077 550480 ~ 550839 (+)
G408239 NA non-coding downstream 173096 551499 ~ 552763 (+)
G408510 NA other downstream 598197 976600 ~ 977099 (+)
G408498 NA other downstream 638664 1017067 ~ 1020734 (+)
G408910 NA other downstream 1254627 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1371497 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1935006 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000094 alkbh5 coding NC_007112.7 CM002885.2 8508753 ~ 8516595 (+)