CI01000300_00807040_00826385 (CHTF18)


Basic Information

Item Value
gene id CI01000300_00807040_00826385
gene name CHTF18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 806846 ~ 826435 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00807040_00826385.mRNA
GTATATAAATGCTGGCCATCAAGGACTTTTATAGAGCGGATGTATGACTTACAATGGAACCGGAAATACACTTACGTACACAAAAATTTTGCGCGAAAATTTCTGTTGCGCATTCATGTACGCTCTGCCACTTGTTTATTCTAATGTCACATTGGCTTTAAATTTCGTGTCAAAACAGACAAGAGAACGTAAACATGGACGAATATGACGAAATGTACGGGATTGAAGATGATTTTGAACAACAGTTTGCGGATGAATTGGAAGTCATGGCTGAAATGGATCGCGAACTTTCATCATCTGCAAAAGTGTCTGAGTTCCGCAATAAGAAGCCGATCCCACAGACGTTCGAGGAAGCCATTGTGTCCGGTGATGTACAATTGAATAAATCAGTAAATAACCAACATCCCGAGAGCATCTCACCTCTAGTATATGAGGAGGAGGAGGAATCCCTGACTCCTAAACCCAAGAAAAGAAGACAAGATGTGGCAAAAAAGCTCCAGTTTGGTGTTGAACACAATGATGACATCACTCCTCCGTCTTCCCCAGAGGTTTACGACAGACGAGCACCAGACCCAAGAGCCTTCCGTAACTCACTTAATGGACTAGGACTGCTAGCAGTTCCAATAGAAGTGCTGAAAGAACAAATTGCAGAGAGACGCCATCGACAAGTGGTGGAGGAATCCCAGAGATTGACAGAACTTATGAACAGTGGTATCGATCCAAAGCTTATTGCAGAAGAGCAGGCAGACTCTGGTGTGGATGGCGATAGTGGGGAAGATGAAGGCTCATCCTCGCGGCTGTGGGTGGATCAGTTCTCACCACAACACTACACTGATCTGCTGAGTGATGATTTCACTAACCGCTGTCTGCTGAAGTGGCTGAAGCTCTGGGACACTGTGGTCTTTGGGCGAGAAAGGAAACCCCGTCCGGCCCCTGCAGACGTGGCACTATTATCAGGTCCTCCTGGACTGGGGAAAACCACGCTAGCACACATTATCGCAAAGCATGCTGGTTACAATGTAGTAGAAATCAACGCTAGTGATGACCGCAGCGCAGAGCTCTTCCAGAAACGCATTGATACCGCTACACAGATGAAGTCAGTCCTGGGAGCCAATGAAAAGCCCAACTGCCTTATTATAGATGAAATTGACGGGGCTCCTGCTGCTGCCATTAATATTTTATTGGCCACTCTGAACCGGAAGGATAGCCGAGATGGAGAGGAGTCAGGTGTTAATGCCTTGAAAAAGAAAAAGAAGAAGCAATCTGTGCTGCTTAGACCAATCATCTGCATCTGCAATGACCTTTATGTTCCAGCTCTGAGGCCGCTGAGACAGCAAGCTTTCCTGTTGTCCTTTCCCCAGACTCTGCCCTCCCGATTAGCTCAAAGACTGGCAGAGATCACGCGGCGTCAGGGTATGAAAGCAGATACAGGCACTCTGATGGCCTTGTGTGAGAAAACCGACAATGACATCCGTTCTTGCATCAACACGTTACAGTTTTTACACAGTCGTGGACAGAAGCACTTGGATCAGCGCAGCGTCAGTTCCATGTGTGTGGGATTGAAAGATCAAAACAAGGGACTCTTCTCAGTTTGGCAGGAAATCTTCCAGCTTCCTCGGCTGAAAAGGAAGCGGATTGGTGGAGATCCTTTTGGTGGTTTTGATGAAGCTGGACCTAAAGATGGTGCACAAAGGATTCAGCACATCTTACATTTGGTCTCATCAAATGGAGAGCATGAGAAACTCACTCAGGGTTTGTATGATAACTTCCTCAACATGAAGCTGAAGGACCCTGGGATGTTGGGTGTGTGCACGGGTCTTGACTGGTTGTGTTTCTCTGACCTGCTGAATGAGTGTGTGCTACATGGACAAAACTACTCGCTCATGCGCTACTTCCCGTTCCTGCCCGCTGCTTTCCACCACCTATATGCCGCAAACTCTGTGCCACGCATCAATTATCCACACAGCCACTACGAGGCTTTCACTAAAGCTCAGCACACCAAGAATGCCCTCCTTGCCATGTTGAATGACATCCCACCTGCCATACAGAGCCGTGTTTGCATAAGCAGTCTCTGTTTGGACATCCTCAGCCTTCTCCTGGAGCTCATCTCCCCCAAACTGCGGCCGGTCAACCCTCAGCTTTACAGCACCAGGGAGAAGCAGCAGCTTTACGATTTGATTGACACCATGATCAACTACAACCTGACCTACAGACAGGACCGCACACCAGAGGGACAGTACACTTATGTGCTGGAGCCTAATGTAGAAGATGTGGTGCGTTTTCCGGGATTGCCTCCCCGGAGGCAGCTAACCTATCAGGTGAAACAGCTGATCGCCAGGGAGACAGAATTAGAGAGAATGAGGAGGGTGGAGAGGGCCCAGCAGAAACGAAACCCAAAAAAGACAGAGGCAGTAAATAAGAATCAAGAAGAGAAGAAAGAGGAGAAGAAAACCGAAGTGAAGAAACAGACAAGCAGGAACCATCAACAGAGGCTGGAGAACATCGTTAAACAGACTGTGGTGGAAAGCAGGCCTGAATTGGATTTCTTTGGACGAGCCATTGTACCCAAGGAGAAGCCAATGGTTACCACCACTACAGGTGAAGATGGCAAAGCAGGCGGAGTGGTGCACATTGGTAAAGCTGTGGGTAACAGTGATGTATGGTTTCGTTTCAATGAAGGTGTGTCCAATGCAGTGCGCAGAAACGTTTACATTCGGGAGTTACTTTAAAGACAGAAGAACGAAGCCCATGTTAATTTACCATTGTAAATCAATACATA

Function

symbol description
chtf18 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K11269 CTF18, CHL12; chromosome transmission fidelity protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00807040_00826385.mRNA True 2779 mRNA 0.47 21 806846 826435

Neighbor

gene id symbol gene type direction distance location
CI01000300_00781242_00787814 PLK1 coding upstream 18695 780675 ~ 788151 (+)
CI01000300_00776177_00776812 NA coding upstream 29908 776017 ~ 776938 (+)
CI01000300_00740073_00744573 NA coding upstream 60439 739096 ~ 746407 (+)
CI01000300_00732352_00734178 PRKCB coding upstream 71880 732008 ~ 734966 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding upstream 77100 695267 ~ 729746 (+)
CI01000300_00864011_00867698 UNCX4.1, UNCX coding downstream 36305 862740 ~ 868771 (+)
CI01000300_01115718_01128729 NA coding downstream 288363 1114798 ~ 1128760 (+)
CI01000300_01128973_01131417 ELFN1B coding downstream 302377 1128812 ~ 1131441 (+)
CI01000300_01225430_01228695 PMM2 coding downstream 398995 1225430 ~ 1228987 (+)
CI01000300_01241607_01253459 RGS11 coding downstream 415172 1241607 ~ 1254009 (+)
G408437 NA non-coding upstream 103078 698185 ~ 703768 (+)
G408420 NA non-coding upstream 125212 681413 ~ 681634 (+)
G408418 NA non-coding upstream 136504 670104 ~ 670342 (+)
G408414 NA non-coding upstream 140113 666506 ~ 666733 (+)
G408413 NA non-coding upstream 140580 666027 ~ 666266 (+)
G408459 NA non-coding downstream 21802 848237 ~ 851139 (+)
G408518 NA non-coding downstream 124886 951321 ~ 951581 (+)
G408520 NA non-coding downstream 152212 978647 ~ 978992 (+)
G408499 NA non-coding downstream 152976 979411 ~ 980408 (+)
G408501 NA non-coding downstream 160759 987194 ~ 987647 (+)
G408510 NA other downstream 150165 976600 ~ 977099 (+)
G408498 NA other downstream 190632 1017067 ~ 1020734 (+)
G408910 NA other downstream 806595 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 923465 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1486974 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location