CI01000300_01225430_01228695 (PMM2)


Basic Information

Item Value
gene id CI01000300_01225430_01228695
gene name PMM2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1225430 ~ 1228987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01225430_01228695.mRNA
ATCTCATGAGATATGGGTCCGAGCGGGAATGATGACTGATTTAATACCATTTATTGATTCATTGAAAACTGCCTTTAAAATGGAAGTGACGAAAAAAGCTACTCCTGACATGCATCAGTTCTTGGCTGAACTGAGAAAGCGTGTAAGAGTCGGGGTGGTTGGAGGATCAGATTTGGACAAAATCAAAGAGCAGTTGGGTGATGATGTGATTGATAGAGTGGATTATGTGTTTGCTGAGAATGGTTTGGTAGCATACAGGTTTGGGCAGCTACACTCTGTGCAGGTAAAACTACCCAAGAAGAGAGGCACATTTATTGAATTCCGCAATGGAATGCTGAACGTCTCCCCAATTGGTCGTAGCTGTAGCCAACAGGAAAGAATCGAATTCTTCGAACTTGATAAGAAGGAGAAAATCAGAGAAAAGTTTGTCTCTGTTTTAAAAGAAGAGTTTGCTGGGAAAGGACTAGCTTTCTCCATTGGTGGGCAGATCAGCTTTGATGTGTTTCCAGAGGGCTGGGATAAGCGCTACTGTCTGGGAATTGTGGAGAAAGACTCATACCAAAGCATCCATTTCTTTGGAGACAAAACAATGCCTGGAGGAAACGATTATGAAATCTTTGCAGACCCCAGGACAATCGGTCATGAGGTCAAGTCCCCCGAGGACACACAACGGATCTGCAAGGAGCTCTTCTTCAGCTGAGACCCTAAGCATGACCTCTGCCATCCAGAATGAAGACTACATCCAAGAACTGTGAAACTATGAACGAAAGTCTCATTTGACAAGCCCATGCCATTATTGTCTTTGTGATCGTACATCATAACAGGTTCTGGATAAACCTGTACATACAGTACATGTGTATATGTTTATTTTAAATGTAATATGATAAAAAAATTTTAGGTTTAAAAAACTGATTGGTGCTAGTGTCATGCCTGAACTTCTGTGCCTTCAATCATGTCAATACTGGACAACATATATTATAAACTTACAATTA

Function

symbol description
pmm2 Predicted to enable phosphomannomutase activity. Acts upstream of or within neurogenesis; protein N-linked glycosylation; and skeletal system development. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; hatching gland; periderm; and polster. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation and congenital disorder of glycosylation Ia. Orthologous to human PMM2 (phosphomannomutase 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17497 PMM; phosphomannomutase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01225430_01228695.mRNA True 992 mRNA 0.41 8 1225430 1228987

Neighbor

gene id symbol gene type direction distance location
CI01000300_01128973_01131417 ELFN1B coding upstream 93989 1128812 ~ 1131441 (+)
CI01000300_01115718_01128729 NA coding upstream 96670 1114798 ~ 1128760 (+)
CI01000300_00864011_00867698 UNCX4.1, UNCX coding upstream 356659 862740 ~ 868771 (+)
CI01000300_00807040_00826385 CHTF18 coding upstream 398995 806846 ~ 826435 (+)
CI01000300_00781242_00787814 PLK1 coding upstream 437279 780675 ~ 788151 (+)
CI01000300_01241607_01253459 RGS11 coding downstream 12620 1241607 ~ 1254009 (+)
CI01000300_01272675_01273342 NA coding downstream 43688 1272675 ~ 1273753 (+)
CI01000300_01275725_01282289 NA coding downstream 46378 1275365 ~ 1282428 (+)
CI01000300_01303949_01305865 NA coding downstream 72920 1301907 ~ 1306339 (+)
CI01000300_01331788_01335474 NA coding downstream 101372 1330359 ~ 1335569 (+)
G408503 NA non-coding upstream 75082 1149802 ~ 1150348 (+)
G408508 NA non-coding upstream 77443 1147620 ~ 1147987 (+)
G408533 NA non-coding upstream 79076 1146132 ~ 1146354 (+)
G408532 NA non-coding upstream 79678 1144981 ~ 1145752 (+)
G408531 NA non-coding upstream 81194 1143944 ~ 1144236 (+)
G408507 NA non-coding downstream 3297 1232284 ~ 1232485 (+)
G408504 NA non-coding downstream 3598 1232585 ~ 1232878 (+)
G408505 NA non-coding downstream 6015 1235002 ~ 1235214 (+)
G408585 NA non-coding downstream 15132 1244119 ~ 1244349 (+)
G408586 NA non-coding downstream 20993 1249980 ~ 1250183 (+)
G408498 NA other upstream 204696 1017067 ~ 1020734 (+)
G408510 NA other upstream 248331 976600 ~ 977099 (+)
G408910 NA other downstream 404043 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 520913 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1084422 2312515 ~ 2321088 (+)
G409984 NA other downstream 2042698 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2672201 3901148 ~ 3902892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000119 pmm2 coding NC_007112.7 CM002885.2 9860381 ~ 9866856 (+)