CI01000300_01634104_01696058 (TRPC5A)


Basic Information

Item Value
gene id CI01000300_01634104_01696058
gene name TRPC5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1634104 ~ 1696058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01634104_01696058.mRNA
ATGAATCCCTTGTCACATCTATACTACAAAAAGAGCAGCTACTCTCCGTACCGGGACCGAATCCCTCTACAGATTGTCCGGGCAGAGGTAGAGCTCTCTCTAGAGGAGCGTTCATTCCTTTTGGCCGTGGAAAAGGGCGACTATGCAGGGGTCCAGCATGCACTACGTGAGGCAGAGGTCTATTACAACATTGATGTGAACTGTGTGGATCCACTAGGCCGCAGTGCACTGCTAATTGCTATTGAAAATGAGAATCTTGAGGTGATGGAGCTACTTCTGGATCACGGAGTGAACACTGGAGATGCTCTGCTGTACGCCATCCGCAAAGAAGTGGTAGGAGCCGTGGAGTTACTGCTGTCCCACAGGAAACCCAGTGGAGAGAAACAGGTTCCATCATTAATGATGGATGCCCAGTTTTCCGAGTTCACACCTGACATTACTCCCATCATGCTCGCCGCCCACACAAACAACTATGAAATCATCAAACTCCTGGTCCAACGCAAAGTCACCATCCCTCGGCCGCACCAGATCCGCTGTGACTGTGTGGAGTGTGTGTCCAGCTCTGAAGTGGACAGCTTGCGTCACTCTCGGTCCCGTCTTAACATCTATAAAGCACTCGCCAGCCCCTCTCTCATTGCCCTCTCCAGCGAGGATCCCATCCTAACCGCCTTCAGATTGGGCTGGGAACTGAAGGAGCTCAGTAAAGTGGAGAACGAGTTTCGACAAGAATACGAGGAGCTTTCTCAACAGTGTAAGCTCTTTGCTAAAGACCTGCTGGACCAGGCACGTAGCTCCCGTGAGCTGGAGACCATCCTCAATCACCGTGATGACCAGAGCGAGGAGCTGGACCCGCGAGAGTGCCGAGACTTGGCTAAACTCAAGCTGGCCATTAAATATCACCAGAAAGAGTTTGTGGCACAGCCAAACTGTCAGCAGCTCTTGGCCACACTATGGTATGACGGCTTTCCTGGCTGGCGGCGCCGTCACTGGGCAGTTAAGCTTGTCATGTGTTTCATTATCGGCCTGCTCTTCCCTGTCTTCTCGCTGATCTACCTGCTGGCTCCAAAAAGCACGCTGGGACTCTTCATCAAAAAACCCTTCATCAAATTTATCTGCCACACGGCCTCCTACCTCACCTTCCTCTTCCTCCTCCTCTTGGCCTCACAGCACATTGCACGCACCAACCTACACATGCAGGGCCCTCCGCCCACTGTGGTGGAGTGGATGATACTACCTTGGGTGCTGGGCTTCATATGGGCTGAGATTAAAGAGATGTGGGATGGAGGTTTTAATGAGTACGTCCATGACTGGTGGAACCTGATGGACTTTGCTATGAATTCTCTGTATTTGGCCACTATTTCTTTAAAGATTGTTGCTTATGTCAAGTATAACAGTTCTCGTCCACGAGAGGAATGGGAGATGTGGCATCCGACGCTGATCGCTGAGGCTTTATTTGCCATTGCTAACATCTTCAGCTCACTTCGGCTCATCTCCCTCTTCACGGCCAACTCTCACCTGGGCCCACTGCAGATTTCTCTGGGCCGCATGTTGCTGGACATCCTCAAGTTCCTCTTCATCTACTGTCTAGTGCTGCTGGCCTTTGCTAATGGACTCAACCAGCTTTACTTCTACTACGAGACAGAGGCAGCAGACGAACCCAACCACTGCAAGGGGATCCGCTGCGAGAAACAGAATAATGCATTCTCAACGTTATTTGAGACACTTCAGTCTCTGTTCTGGTCGATATTTGGCCTCCTGAATCTTTATGTAACCAATGTGAAGGCTCGGCACGAGTTCACTGAGTTTGTTGGAGCCACCATGTTCGGCACCTACAATGTCATCTCACTGGTGGTTCTCCTCAACATGCTCATCGCTATGATGAACAACTCCTACCAGCTCATCGCTGACCATGCTGACATCGAATGGAAGTTTGCTCGGACCAAGCTGTGGATGAGTTACTTTGATGAGGGAGGGACACTCCCTCCACCATTCAATGTAGTCCCCAGTCCTAAGTCTTTCTGGTACCTGTGTCTATGGGTACACGGGCGGCTCTGCGGGTCGGAGACTGCTCCGCCTGAAGAAGAACCCCATAAACACGAGAATCTGAAGGAGTTTACGGAAAAGCATGCTGACAGGCTGATACAGAATCAGCATTATCAGGAGGTCATCCGTAGTCTAGTGAAGAGGTACGTGGCGTCCATGATCCGCAACGCTAAGACAAACGAAGGGCTGACGGAGGAGAATTTTAAGGAGCTGAAACAGGACATTTCCAGCTTTCGCTACGAAGTTTTGGATCTTCTCGGCAACCGAAAGCCGCCCCGGCGGAACTATTCCTCCAGCAGCGAGGCCACGCTTCGAGACGAGGTCAGCGACGATGGCGAGGCCTGTTATCACAGTGATGGGAGCAGCGTCGGGGCCAAAGGCGTCTCTTTCAAAACCATCACGCCTTCAGATCCATCCTACGGAGTCTCCGCCCTTTTCCGCTCCATCTCCGGAATGGAGGCGTCAACAGCAGCAGCATCGTCTGCGTACAGGGAAGATAAACCAAAGATCAATGGACTGAGGAAGAATCCCTCGCCCTCCTCTTCCCTGTCCTCAGTGGCTCCAGCAAGACCTGCACTTTCACGGACTTGGAGGCGCTTTTCACGCTTCTCTAGTTCCAAGAAGAACTCCTTCAGACGGCTCGGGCTGCTGTTCTCACGCATGGGCAGCCACATTCCGCAGCCTGCAGGTGTTACTGCTGCAACCTACACTATCTCAGATGGATTGCTTCACCCGCCGGGGGCTTGGCAGGACTTGGGCTTCACCAGAGGCGACGGTCCAGTCACCCGCAGCGAGACCAACCTTAATCAGGTGGACGTGGCCACTTTAAATGAGGGCGACAGTGTTGCCATGACAACCAATGGACAGAGAGTTAACGGGAGGGATGTTTTACTGACATTAGGACCTCTGTCCCCATCTTCTTCCCTGCACTGTGCTTCCAGTTTCTCCGCCTCCAGCTCCCGCCTCCTGGACTCAAATGAGGACGTGTTCCAGGGATTGGTCGGGCCCTGTGGCGGACAAACGCCAGACTCGTCCCGCTGGGTAACGGAACAGGACGATTCTGTGACCACGCAGCTA

Function

symbol description
trpc5a Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport; manganese ion transport; and regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in head; integument; and nervous system. Orthologous to human TRPC5 (transient receptor potential cation channel subfamily C member 5).

NR:

description
transient receptor potential cation channel subfamily c member 5a

GO:

id name namespace
GO:0015279 store-operated calcium channel activity molecular_function

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01634104_01696058.mRNA True 3120 mRNA 0.53 10 1634104 1696058

Neighbor

gene id symbol gene type direction distance location
CI01000300_01623190_01629652 CNPY3, TNRC5 coding downstream 3065 1622883 ~ 1631039 (-)
CI01000300_01537230_01547051 NA coding downstream 87053 1537176 ~ 1547051 (-)
CI01000300_01387744_01388660 NA coding downstream 244866 1387744 ~ 1389238 (-)
CI01000300_01384469_01386368 FGA coding downstream 247736 1384319 ~ 1386368 (-)
CI01000300_01381458_01383409 NA coding downstream 250695 1381005 ~ 1383409 (-)
CI01000300_01726202_01727298 NA coding upstream 29976 1726034 ~ 1727298 (-)
CI01000300_01730095_01731153 NA coding upstream 34037 1730095 ~ 1731153 (-)
CI01000300_01733901_01736015 NA coding upstream 37602 1733660 ~ 1736022 (-)
CI01000300_01742156_01744802 NA coding upstream 46098 1742156 ~ 1744802 (-)
CI01000300_01812173_01822492 CFAP221 coding upstream 116088 1812146 ~ 1822492 (-)
G409388 NA non-coding downstream 1276 1632490 ~ 1632828 (-)
G409424 NA non-coding downstream 15020 1618850 ~ 1619084 (-)
G409402 NA non-coding downstream 19451 1563145 ~ 1614653 (-)
G409411 NA non-coding downstream 40794 1592979 ~ 1593310 (-)
G409399 NA non-coding downstream 82379 1551354 ~ 1551725 (-)
G409454 NA non-coding upstream 67327 1763385 ~ 1763621 (-)
G409380 NA non-coding upstream 76033 1772091 ~ 1784816 (-)
G409459 NA non-coding upstream 82443 1778501 ~ 1780832 (-)
G409513 NA non-coding upstream 284672 1980730 ~ 1981204 (-)
G409515 NA non-coding upstream 285986 1982044 ~ 1982308 (-)
G408318 NA other downstream 1347217 279917 ~ 286887 (-)
G409558 NA other upstream 591123 2287181 ~ 2288973 (-)
G409775 NA other upstream 1167100 2863158 ~ 2863998 (-)
G410498 NA other upstream 2105081 3801139 ~ 3808207 (-)
CI01000300_04075307_04079312 NA other upstream 2380706 4074636 ~ 4080539 (-)
G411012 NA other upstream 2694262 4390320 ~ 4395121 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location