G408216


Basic Information

Item Value
gene id G408216
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 450538 ~ 461022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469078
GTCTTGTGCAGTTCTTTATCCCTTCAAACTTGTAGGCTGAGTACACTGGGATCCTGTTGTATGTATCATAATATGTGGCATAATAGTAACGATTATTTAGATTTTGGCAGATCTGCTTGTACTGTGATCCAATAAATGTTGTTGGTGATTTTCCACCTGCAAAAAATTGACCACATTCCTTCTCAAAATCCGGCACAACTTTGGCTGAACCACCGGAGAGAAGAAACAGCATCAGCACATGAAGAAGCAGTATCATGATGAAGAGGATGAGATGATGAATTATCAAGATCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469078 True 293 lncRNA 0.39 2 450538 461022

Neighbor

gene id symbol gene type direction distance location
CI01000300_00422911_00432735 NA coding upstream 17766 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 54795 390611 ~ 395743 (+)
CI01000300_00380880_00388140 MIEF2 coding upstream 61973 380880 ~ 388565 (+)
CI01000300_00373895_00378177 ALKBH5 coding upstream 72135 373895 ~ 378403 (+)
CI01000300_00324861_00371897 NA coding upstream 78117 324566 ~ 372421 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding downstream 24872 485894 ~ 492836 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding downstream 47454 508476 ~ 514751 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 221801 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 234245 695267 ~ 729746 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 270986 732008 ~ 734966 (+)
G408197 NA non-coding upstream 77422 372900 ~ 373116 (+)
G408172 NA non-coding upstream 129462 320877 ~ 321076 (+)
G408171 NA non-coding upstream 129695 320609 ~ 320843 (+)
G408166 NA non-coding upstream 155564 294550 ~ 294974 (+)
G408163 NA non-coding upstream 161575 288654 ~ 288963 (+)
G408235 NA non-coding downstream 82227 543249 ~ 543488 (+)
G408238 NA non-coding downstream 89458 550480 ~ 550839 (+)
G408239 NA non-coding downstream 90477 551499 ~ 552763 (+)
G408413 NA non-coding downstream 205005 666027 ~ 666266 (+)
G408414 NA non-coding downstream 205484 666506 ~ 666733 (+)
G408510 NA other downstream 515578 976600 ~ 977099 (+)
G408498 NA other downstream 556045 1017067 ~ 1020734 (+)
G408910 NA other downstream 1172008 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1288878 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1852387 2312515 ~ 2321088 (+)

Expression


Co-expression Network