G408420


Basic Information

Item Value
gene id G408420
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 681413 ~ 681634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469317
TTATAAGATGACCAAAACTTGTCAGCGGAATCCGTGTCTTCACGGGGGAGGTCGGCATGTCTGTAGCACAAAATACATATTTTAAAACGTGTATTGCTGCAAATCAAAACAAATGACCATGGAAATATTAGTATGTCAGTCTTGAAATGTATATAAAACCTCAACACTTACTGTATTACTCTAAAAATACAGTTTCTACAAGGGCATACTTCGGTTGTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469317 True 222 lncRNA 0.36 1 681413 681634

Neighbor

gene id symbol gene type direction distance location
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding upstream 166662 508476 ~ 514751 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding upstream 188577 485894 ~ 492836 (+)
CI01000300_00422911_00432735 NA coding upstream 248641 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 285670 390611 ~ 395743 (+)
CI01000300_00380880_00388140 MIEF2 coding upstream 292848 380880 ~ 388565 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 1189 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 13633 695267 ~ 729746 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 50374 732008 ~ 734966 (+)
CI01000300_00740073_00744573 NA coding downstream 57462 739096 ~ 746407 (+)
CI01000300_00776177_00776812 NA coding downstream 94383 776017 ~ 776938 (+)
G408418 NA non-coding upstream 11071 670104 ~ 670342 (+)
G408414 NA non-coding upstream 14680 666506 ~ 666733 (+)
G408413 NA non-coding upstream 15147 666027 ~ 666266 (+)
G408239 NA non-coding upstream 128650 551499 ~ 552763 (+)
G408238 NA non-coding upstream 130574 550480 ~ 550839 (+)
G408437 NA non-coding downstream 16551 698185 ~ 703768 (+)
G408459 NA non-coding downstream 166603 848237 ~ 851139 (+)
G408518 NA non-coding downstream 269687 951321 ~ 951581 (+)
G408520 NA non-coding downstream 297013 978647 ~ 978992 (+)
G408499 NA non-coding downstream 297777 979411 ~ 980408 (+)
G408510 NA other downstream 294966 976600 ~ 977099 (+)
G408498 NA other downstream 335433 1017067 ~ 1020734 (+)
G408910 NA other downstream 951396 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1068266 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1631775 2312515 ~ 2321088 (+)

Expression


Co-expression Network