Gene
RNA
| Item | Value |
|---|---|
| gene id | G409388 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 1632490 ~ 1632828 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU470376 | True | 339 | lncRNA | 0.35 | 1 | 1632490 | 1632828 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000300_01623190_01629652 | CNPY3, TNRC5 | coding | downstream | 1451 | 1622883 ~ 1631039 (-) |
| CI01000300_01537230_01547051 | NA | coding | downstream | 85439 | 1537176 ~ 1547051 (-) |
| CI01000300_01387744_01388660 | NA | coding | downstream | 243252 | 1387744 ~ 1389238 (-) |
| CI01000300_01384469_01386368 | FGA | coding | downstream | 246122 | 1384319 ~ 1386368 (-) |
| CI01000300_01381458_01383409 | NA | coding | downstream | 249081 | 1381005 ~ 1383409 (-) |
| CI01000300_01634104_01696058 | TRPC5A | coding | upstream | 1276 | 1634104 ~ 1696058 (-) |
| CI01000300_01726202_01727298 | NA | coding | upstream | 93206 | 1726034 ~ 1727298 (-) |
| CI01000300_01730095_01731153 | NA | coding | upstream | 97267 | 1730095 ~ 1731153 (-) |
| CI01000300_01733901_01736015 | NA | coding | upstream | 100832 | 1733660 ~ 1736022 (-) |
| CI01000300_01742156_01744802 | NA | coding | upstream | 109328 | 1742156 ~ 1744802 (-) |
| G409424 | NA | non-coding | downstream | 13406 | 1618850 ~ 1619084 (-) |
| G409402 | NA | non-coding | downstream | 17837 | 1563145 ~ 1614653 (-) |
| G409411 | NA | non-coding | downstream | 39180 | 1592979 ~ 1593310 (-) |
| G409399 | NA | non-coding | downstream | 80765 | 1551354 ~ 1551725 (-) |
| G409374 | NA | non-coding | downstream | 92674 | 1539580 ~ 1539816 (-) |
| G409454 | NA | non-coding | upstream | 130557 | 1763385 ~ 1763621 (-) |
| G409380 | NA | non-coding | upstream | 139263 | 1772091 ~ 1784816 (-) |
| G409459 | NA | non-coding | upstream | 145673 | 1778501 ~ 1780832 (-) |
| G409513 | NA | non-coding | upstream | 347902 | 1980730 ~ 1981204 (-) |
| G409515 | NA | non-coding | upstream | 349216 | 1982044 ~ 1982308 (-) |
| G408318 | NA | other | downstream | 1345603 | 279917 ~ 286887 (-) |
| G409558 | NA | other | upstream | 654353 | 2287181 ~ 2288973 (-) |
| G409775 | NA | other | upstream | 1230330 | 2863158 ~ 2863998 (-) |
| G410498 | NA | other | upstream | 2168311 | 3801139 ~ 3808207 (-) |
| CI01000300_04075307_04079312 | NA | other | upstream | 2443936 | 4074636 ~ 4080539 (-) |
| G411012 | NA | other | upstream | 2757492 | 4390320 ~ 4395121 (-) |
