CI01000303_00250393_00261161 (KHSRP)


Basic Information

Item Value
gene id CI01000303_00250393_00261161
gene name KHSRP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000303
NCBI id null
chromosome length 460723
location 250332 ~ 261161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000303_00250393_00261161.mRNA
CCACTCATTAAGAACGCCTATAGGAGAGCTCTTTCAGACCTGCAGGCCTTTTGTCCCTCCCATGCGTTTGTCTCGCTTGTCTTCCCGCGTCTGCGCACCTCCGCCCGGCCTAGACCTCCCCGCCGTATCCCGTACACTTCACCCCTCCGCACGGACAGCATGTCTGAATACAGCGCGGTGCCGCCGCCCGGGCCCGGAGCGGCTCTAGGAGCCGGTGGACTCAAGAAAGACGCGTTTGCCGATGCGGTACAGCGCGCTCGACAGATCGCAGCAAAGATCGGCGGAGACGTAACGGGTCCCCCTATGAGCAATAACGGAGGAGCGGAGAGTTATCCCTTCGCGGCACAGAAACGATCGCTGGAGGACGGAGATCAACCTGAAAGTAAGAAGATGGCATCCGACAGGGACAACGCTGCAGCCTTGTGTACGAGCTCTTTTACTTTCTTTACACACTCTCAAAGCAAATGCGTGTGTATTTTTAGAGCAATGATTTTATCCCTGTCTCATCCACAGCTATTGGAGCCCAGCTGGCTGCCCTTTCCCAGCAGAGAAGAGTACAGAGTCCCTGATGGCATGGTTGGACTCATCATTGGTCGCGGTGGAGAGCAGATCAATAAGATCCAGCAGGAGTCTGGCTGTAAAGTTCAGATTGCTCCAGGCGAGTCAAACACGGACAGCGGTGGTCTTCCAGAGAGGAGCGTGTCTCTCACCGGAGGCCCTGAAGCCATCCAGAAGGCCAAAATGCTACTGGATGACATCGTCTCTCGGGGGCGCGGCACTCCCCCCTCCTTCCACGAGTCGACCAATGGGAGCGGAAACATGCAGGAAATGATCATTCCAGCAGGGAAAGCTGGTCTCATCATCGGCAAAGGAGGAGAGACCATTAAACAGCTGCAGGAGCGAGCTGGTGTGAAGATGATTTTGATTCAGGATGCTTCTCAGGGGCCAAACATGGACAAACCACTGCGCATCATTGGAGATCCTTACAAAGTCCAGCAAGCACGTGAAATGGTGCAGGAGATTCTGCGAGAGCGGGATCATCCAGGCTTTGACAGAAACGAGTACGGCTCTCGAATGGGTGGAGGAGGCGGTGGTGGAGGAATCGAGGTGCCCGTTCCACGTCACTCTGTGGGCGTTGTGATTGGCCGAAGCGGTGAGATGATCAAGAAGATTCAAAATGATGCTGGTGTGAGGATACAGTTTAAACCAGATGACGGTACCGGTCCAGATAAGATCGCTCACGTAATGGGTCCTCCTGACCGCTGCGAACACGCCGCCAGTATCATCAACGACCTCCTGCAGAGCATCAGAGTACGAGAGGAAGGAGGAGGGGTGAGTGATGAAGGAGAGATGGGTCCTCCCGGTCCTCCTGGCACAGGCATGCCACCGGGTGGGCGTGGCAGGGGGCGTGGTCCAGGAAACTGGGGCCCTCCTGGCGGCGAGATGACCTTTTCAATCCCCGCCCACAAATGCGGTCTTGTGATTGGCCGAGGCGGTGAGAACGTGAAGGCGATCAACCAGCAGACCGGCGCCTTCGTGGAGATCTCACGCCAGCCGCCGCCCAACGGCGACCCCAACTTCAAACTGTTTACCATCAGAGGCTCACCTCAGCAGATCGACCACGCCAAACAGCTGATCGAGGACAAGATCGAAGGTCCTCTGTGCCCTGTTGGTCCCGGACCGGGTGGGCCAGGCCCTGCTGGACCCATGGGCCCCTACAACCCAAACCCGTACCAGCCCGGACCCCCGGGTGGACCGCCACACGGTGGTCCTCCTGGAGGTCAGTATCCACAGGGTTGGGGAAACGCGTACCAGCAGTGGCAGCCGCACGATCCCAGTAAAGCAGCAACAGATCCTAACGCAGCATGGGCGGCTTATTACGCACAGTACTACCAGCAGCCTGGAGGGGCCGCTATGCCGGGACAGACGCCTGCGGCCCAGCCAGCCGCTGCTGCTCCCGCTGACCAGAGCCAAGCTGCTCCAGGGACTGCCCAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAAAAGATGGCCGCGGCAGGAGGAGGCGCTGCACCCGCTGCAGGAGGAGCTCAAGCCGCAGGAGCCGCAGCCACGGGACAGACGGACTACAGCGCCGCATGGGCTGAGTACTACAGACAGCAGGCTGCTTATTACGGACAGACGGGACAGGCCCCCGGACAGCCCGGTGCAACACCGCAGGGCCAGCAGGTACAATCAATGATCCCTCTGTTTTTACTTTGAGAATGTGCTGTTTTCAGTCAGAAGAACCATTTTATCTAAACAGCCATTGTTGGCAAATAAA

Function

symbol description
khsrp Enables mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Orthologous to human KHSRP (KH-type splicing regulatory protein).

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000303_00250393_00261161.mRNA True 2311 mRNA 0.58 16 250332 261161

Neighbor

gene id symbol gene type direction distance location
CI01000303_00229261_00235693 CRTAC1A coding downstream 14639 229024 ~ 235693 (-)
CI01000303_00191496_00193762 NA coding downstream 56570 191105 ~ 193762 (-)
CI01000303_00170496_00174082 NA coding downstream 76250 170413 ~ 174082 (-)
CI01000303_00166289_00170633 PGAM1A, PGAM1B, PGM, PGAM1 coding downstream 79699 166149 ~ 170633 (-)
CI01000303_00161493_00165057 EXOSC1 coding downstream 85275 161011 ~ 165057 (-)
CI01000303_00264251_00274076 SLC25A23A coding upstream 2669 263830 ~ 274076 (-)
CI01000303_00280626_00281178 C26H19ORF53 coding upstream 18956 280117 ~ 281206 (-)
CI01000303_00283355_00296266 VPS54 coding upstream 21487 282648 ~ 296266 (-)
CI01000303_00300301_00306242 PELI1A coding upstream 38363 299524 ~ 306242 (-)
CI01000303_00346678_00347501 NA coding upstream 85197 346358 ~ 347501 (-)
G417853 NA non-coding downstream 156563 93227 ~ 93769 (-)
G417847 NA non-coding downstream 165159 82969 ~ 85173 (-)
G417844 NA non-coding downstream 173895 70497 ~ 76437 (-)
G417836 NA non-coding downstream 192087 47230 ~ 58245 (-)
G417799 NA non-coding upstream 407 261568 ~ 262633 (-)
G417875 NA non-coding upstream 68790 329951 ~ 330249 (-)
G417878 NA non-coding upstream 106499 367660 ~ 367919 (-)
G417880 NA non-coding upstream 110078 371239 ~ 371500 (-)
G417882 NA non-coding upstream 112592 373753 ~ 374002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008368 NA coding CM030126.1 CM030126.1 97569 ~ 111307 (+)