CI01000304_11665326_11670757 (CCT8)


Basic Information

Item Value
gene id CI01000304_11665326_11670757
gene name CCT8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11665259 ~ 11670960 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11665326_11670757.mRNA
ATATTAATAAATATTAAATAGCTTGCTTTTTCTGATTTTTTTTCTGGGTGTGCACTCAATCGGTGCTCCACTATCTCGCCTATCTGAATCAGTAATCCGTGTTTCTGCTCTCTGCAGCAGCGCCTGTTCTTTCTTAGCTGCATGCTTTCAGTGCGCTGCAGCCTCATCCAGCATCAGTCTAATTTCCACCTTTTCTGATCAAAATGGCTCTTCACGTCCCCAAAGCCCCGGGCTTTGCTCAGATGTTAAAGGATGGTGCGAAGCACTATTCGGGTCTTGAAGAGGCTGTTTACAGGAACATCCAGGCATGCAAGGAACTGGCACAGACCACAAGAACTGCATATGGACCCAATGGTATGAACAAAATGGTCATCAACCACTTGGAGAAGCTCTTTGTCACAAATGACGCTGCCACTATTCTGAGAGAGCTGGAGGTTCAGCACCCGGCAGCCAAAATGATCGTGATGGCATCCCACATGCAAGAGCAGGAAGTAGGTGATGGCACAAACTTTGTGCTGGTGTTTGCTGGTGCTCTGCTGGAGCTTGCCGAGGAGCTGCTGAGGATGGGCCTGTCCGTTTCAGAGGTGATTGAGGGCTATGAGCTGGCATGTAAGAAAACTCTGGAAATTCTGCCCGATTGCGTCTGCTCATCTGCTAAGAACCTGCATGATCTGGAAGAGGCCACAGCCATGATCCGCCCAGCCGTCATGAGCAAACAATACGGCAATGAGGACTTCCTGGCCAAGCTCATTGCACAGGCCTGTGTCTCTATATTCCCTGAGTCTGGCAACTTCAATGTCGATAATGTCAGAGTGTGCAAGATTTTGAAAGAGACAGAAGGAGACCTCACATCAGTGAAAGATGCAAAGATAGCAGTGTTCTCCTGTCCATTTGACTGCATGGTTACTGAAACCAAGGGAACAGTACTTATAAAGAACGCAGAGGAGCTCATGAATTTCAGTAAAGGAGAAGAGGACCTGATGGAGGTCCAGGTGAAGTCTATCGCTGATTCAGGGGCCAATGTGATTGTGACAGGGGGCAAAATTGCTGATATGGCCCTTCATTATGCCAACAAGTACAAGCTCATGGTGGTCAGGCTGAATTCAAAATGGGACCTCAGAAGACTATGCAAAACTCTCGGAGCCACGGCGTTGCCCAGATTGACTCCCCCTACTCCAGAAGAGATGGGACACTGTGACAGTGTTTACCTGTCCGAGGTTGGAGATACGCAGGTTGTGGTCTTCAAACATGATAAAGAGGATGGCGCCATCTCTACTTTAGTAATTCGTGGGTCCACAGACAACCTGATGGATGACATTGAGCGTGCCATCGATGATGGAGTTAACACCTTTAAAGTCCTTGTCAGGGACGCACGCCTTTGTCCAGGTGCCGGTGCCACTGAAATTGAGCTTGCGAAACACATCACCTCTTATGGCGAATCTTGCCCAGGCCTGGAGCAGTACGCCATCAAGAAGTTCGCGGAGGCGTTTGAAGCAGTGCCCCGTGCTCTGGCTGAAAACTCTGGCGTGAAGGGCAATGAGCTGATCTCTAAACTGTATGCCGCACACCACGAAGGCAACAAGAATTACGGCTTTGATATTGAGGTGAGAAAAGGCCCGTGGCAAACGCTTGCTTTGTAAGGGCTTCAAGTATAAAAAGGGGGAAGAGAAGCTATTTTTAATTTGGAGGCAGCAAACCTGAAATAAA

Function

symbol description
cct8 Predicted to enable unfolded protein binding activity. Acts upstream of or within behavioral response to nicotine. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Is expressed in brain. Orthologous to human CCT8 (chaperonin containing TCP1 subunit 8).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09500 CCT8; T-complex protein 1 subunit theta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11665326_11670757.mRNA True 1707 mRNA 0.49 13 11665259 11670960

Neighbor

gene id symbol gene type direction distance location
CI01000304_11654405_11655792 NA coding downstream 9243 11653935 ~ 11656016 (-)
CI01000304_11638983_11647850 TMEM135 coding downstream 16174 11638413 ~ 11649085 (-)
CI01000304_11575414_11578638 NA coding downstream 86621 11575328 ~ 11578638 (-)
CI01000304_11526057_11569114 NA coding downstream 96145 11525999 ~ 11569114 (-)
CI01000304_11479874_11503083 MTNR1B, MTNR1BB coding downstream 161765 11479670 ~ 11503494 (-)
CI01000304_11706322_11747949 GRIK1B, GRIK1, GRIK2, GRIK1A coding upstream 35255 11706215 ~ 11747949 (-)
CI01000304_11769604_11771720 NA coding upstream 98582 11769542 ~ 11771720 (-)
CI01000304_11773915_11805873 TIAM1B, TIAM1 coding upstream 101886 11772846 ~ 11808328 (-)
CI01000304_11845828_11848857 SOD1 coding upstream 174654 11845614 ~ 11849163 (-)
CI01000304_11850324_11861609 SCAF4, SCAF4A coding upstream 178817 11849777 ~ 11861609 (-)
G425533 NA non-coding downstream 65993 11598889 ~ 11599266 (-)
G425517 NA non-coding downstream 85827 11579231 ~ 11579432 (-)
G425479 NA non-coding downstream 217305 11447627 ~ 11447954 (-)
G425269 NA non-coding downstream 235109 11429617 ~ 11430150 (-)
G425204 NA non-coding downstream 384055 11280976 ~ 11281204 (-)
G425559 NA non-coding upstream 1402 11672362 ~ 11672698 (-)
G425549 NA non-coding upstream 25634 11696594 ~ 11698398 (-)
G425550 NA non-coding upstream 30204 11701164 ~ 11703380 (-)
G425582 NA non-coding upstream 220000 11890960 ~ 11891233 (-)
G425992 NA non-coding upstream 313657 11984617 ~ 11984915 (-)
CI01000304_11338304_11348212 ILK other downstream 308113 11338019 ~ 11348212 (-)
G424808 NA other downstream 1122594 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1472364 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1500929 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1925788 9736746 ~ 9738777 (-)
G425580 NA other upstream 197717 11868677 ~ 11872906 (-)
G426106 NA other upstream 665741 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 887894 12558854 ~ 12560135 (-)
G426147 NA other upstream 1025038 12719497 ~ 12805926 (-)
G427057 NA other upstream 1836681 13507641 ~ 13507922 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location