CI01000304_13692322_13711234 (ALCAMA)


Basic Information

Item Value
gene id CI01000304_13692322_13711234
gene name ALCAMA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13691958 ~ 13711234 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_13692322_13711234.mRNA
GGAGCTGCTTGGAGACAGTTATAGGTCTGTACGGTGAGACCATTGAAGTGCCATGCAACAATGGAAATAACAAGCCAAATGGCCTTATTTTCACCAAATGGAAATATGTGAAAGATGACGGCACTAACGGCGATCTACTCGTGAAGCAGGCTGCGAAAGACCAGGCAACCGTGTCCGCCACAGACAGCTACAAAAGTAGAGTTAGCATCGCCACCAACTCCAGCCTGCTGATCGCCCAGGGCTCACTGGCCGACCAGAGAGTTTTCACCTGCATGGTGGTGTCTTTAACCAACCTGGAAGAATACTCTGTGGAAGTGAAAGTTTACAAAAAACCATCAGCCCCTGTAATCAAAAACAAAGCGAAAGAACTGGAAAACGGCAAGCTGACACAGACGGTGTTTTCTCCAGTACACAAACCATCCGGTGTACTAACAATGTGCAGGATCAAACCCTGTGCCTTTGTTTTCATTACCCAGCATGCCTCTCCAGTAGTCTCAACATTGACACACACCTGCTGTTATCACAATAGCTCGTCAGCATGTGATCCTGTCAGCATGTTATTAATGCAGAGCCTCTTCGGCCTCTGGCAGCGTTTTTTCTCAACCAGAGAGAAGGAAAAGGGCGAGAAAAAGAAATTGGGGGAATGTGTGGTGGAGAGTGCCAACCCAGCGGCATATCTCATATGGATGAAGAACAACCAGCCCCTGGAGAATGACGACAAGACGATCATTATCACATCTACTGTCACCAAGGACCCAGTCACAGGTCTGTCCAGCACCTCTTCCGGTCTGAAGTACACAGCCAGGAAAGAGGATGTGGCATCACAGTTCACCTGCACAGCAAAGCATGAGATGGGCCCCGACCAGGTTTCAGCAGCAGAGACCTTCCCAATTCACTACCCCACTGAGAAGGTGAATCTACAGGTTGTTTCTCAGAGCCCCATTAGGGAAGGTGATAATGTGACACTGAAATGCCAGGCGGACGGAAACCCTCCTCCCACCAGCTTCAACTTCAACATTAAGGGCAAGAAGGTCACGGTGACTGACAAGGATGTCTACACACTGACTGGCGTTACCCGAGATGACAGTGGCTTGTACAAGTGCTCCCTTCTTGACAACGATGTAATGGAGTCCACTCAGATCGTCACATTCAAAAGGCCTGATGATCTCCATAATGTGGATTTAGTGACGCTTCGGTTTGGAGATTCAGATGTATTTCACGGCATCTGTGCAGCACGGTTTCAAAGCGGGTGGCATCTCAGACTTCTGGATGTAAGCCTCACTCCCACAGGAAAGGTGTTAAAGAAGCTCGGGGAAAACTTGGTTGTGTCATTGGAAAAGAACTCCTCTAATGAAACAAAGGTGACATGGACTAAGGATAACCGTAAACTAGACAAACTGCCCGACTTCTCTCAGTTGACGTATAGCGACGCAGGTCTGTATGTGTGCGACGTGTCCATTGTAGGAATCAGACGCAGTTTGTCCTTCGAGCTTACTGTAGAAGGTGTTCCAAAAATTTCAAGTCTGACAAAGCATCGCAGCAACGACGGCAAACACAAAGTCTTGACGTGTGAGGCAGAGGGTTCACCTAAACCTGACGTGCAGTGGAGTGTCAACGGAACAAACGATGAAATGTCATACGTCAACGGGAAGGCCACATACAAACTGACCGTAGTGCCCAGTAAGAACCTCACCGTCAGCTGTCACGTGACCAATAAACTCGGATCCGACACTAAGGAAATTAGCGTGTTTTCCCTATTTGAGGAGGACAAGTCCAAACCAGAAAAAAACGAACATGGTGCGGAGCAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTTTTCCTAGCCGCTGCTCTGGTGGGACTCATCTACTGGCTCTATATCAAGAAAACAAGACAAGGCAGTTGGAAGACCGGAGAGAAGGAGGCAGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAAAGAGCAGAGAGGCGTCAAAAGGAATGAAGAAGGTGAGGATTTTTCTCTTGCGGTTTAACATTTCAAAGCTCAGGGCCGAGTGCAAAACTCACACCTGTCAATGGTGGGTGAATTAAGAAAACTTACTGGCAATAATATTTTTTTTACCGGCCATGAAACTTGCATAATATTTGAAATGAATACATTTCATATAAAAATAATTAAAAAAATATAAAAAATCTAGTTATAAAATGTAATACATTTTAAATTAAATAGTGTATATGCATTACTAATATTTATTTATTTATTTTTGAAAATAATGCAAAGAAAATCTATGTCGTGGCCAGTAATATTTATTGGCAGTAAAGAACACACACATATAAA

Function

symbol description
alcama Enables identical protein binding activity. Involved in cartilage morphogenesis; positive regulation of cell morphogenesis involved in differentiation; and positive regulation of gene expression. Acts upstream of or within animal organ development and axonogenesis. Located in axon. Is expressed in several structures, including digestive system; immature eye; musculature system; nervous system; and pericardial region. Orthologous to human ALCAM (activated leukocyte cell adhesion molecule).

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_13692322_13711234.mRNA True 2352 mRNA 0.45 17 13691958 13711234

Neighbor

gene id symbol gene type direction distance location
CI01000304_13541959_13564807 NA coding downstream 127151 13541225 ~ 13564807 (-)
CI01000304_13532811_13534129 NA coding downstream 157829 13532811 ~ 13534129 (-)
CI01000304_13529418_13530787 NA coding downstream 161171 13529130 ~ 13530787 (-)
CI01000304_13517595_13527868 NA coding downstream 164090 13517176 ~ 13527868 (-)
CI01000304_13479162_13481853 BTG3 coding downstream 209664 13478741 ~ 13482294 (-)
CI01000304_13741930_13742220 NA coding upstream 30460 13741694 ~ 13742868 (-)
CI01000304_13903994_13909017 NA coding upstream 192482 13903716 ~ 13909017 (-)
CI01000304_13914502_13920992 ZPLD1 coding upstream 202753 13913987 ~ 13920992 (-)
CI01000304_13979830_13985175 NA coding upstream 268556 13979790 ~ 13985589 (-)
CI01000304_14009988_14011059 TMEM126A coding upstream 298628 14009862 ~ 14011169 (-)
G427077 NA non-coding downstream 77968 13612138 ~ 13613990 (-)
G427076 NA non-coding downstream 82358 13609386 ~ 13609600 (-)
G427064 NA non-coding downstream 102588 13589147 ~ 13589370 (-)
G427000 NA non-coding downstream 178132 13510079 ~ 13513826 (-)
G427130 NA non-coding upstream 70571 13781805 ~ 13782038 (-)
G427136 NA non-coding upstream 93232 13804466 ~ 13804728 (-)
G427144 NA non-coding upstream 158554 13869788 ~ 13870045 (-)
G427154 NA non-coding upstream 220557 13931791 ~ 13950548 (-)
G427155 NA non-coding upstream 246425 13957659 ~ 13959624 (-)
G427057 NA other downstream 184036 13507641 ~ 13507922 (-)
G426147 NA other downstream 652643 12719497 ~ 12805926 (-)
CI01000304_12559311_12559998 NA other downstream 1131823 12558854 ~ 12560135 (-)
G426106 NA other downstream 1351730 12336701 ~ 12340228 (-)
G425580 NA other downstream 1819052 11868677 ~ 11872906 (-)
G427309 NA other upstream 478234 14181932 ~ 14237078 (-)
CI01000304_14265881_14269102 NA other upstream 557189 14265476 ~ 14269571 (-)
CI01000304_14286960_14294449 NA other upstream 572437 14286960 ~ 14294449 (-)
G427423 NA other upstream 650214 14361448 ~ 14361892 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location