CI01000304_16769537_16780398 (SUPT20, SUPT20H)


Basic Information

Item Value
gene id CI01000304_16769537_16780398
gene name SUPT20, SUPT20H
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16769417 ~ 16780398 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16769537_16780398.mRNA
GGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACACAGCAACCACGATGGAAAGAGACGAGTGTCCTCGAGTGGAAGGAAATCCTTATATCAGAAACTTTATGAATTGTACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGGAGAAATGTGAATCTACTAGAGAAGCTGGTCTCACAGGAGTCAGTTTCATGTCTGGTGGTCAACCTGTACCCTGGCAATGAAGGATATTCGCTTATGCTTAGAGGAAAAAATGGATCTGATTCAGAAACAATCCGACTTCGCTATGAAGAAGGAGAGTTACTGGAGTACCTGGATGCTGAGGAGCTGCCGCCCATCCTTGTAGACCTTCTAGAAAAATCGCAAGTTAGTGGCATCACTGAACATTTTTTTAAAATGTGTAATTTCTTAATGTGTTTTAGGAGGCATTCACGAGCAGCTCTGAACAGACAGCAGGAGATGATGAGCCACTGCCCCGCACTGCCACAGCTCCGACTCCTGGACTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCCTCCATAGACCTTAAGATCTCCAAAGCTGGGAATTGTGTGGACATGTGGAAACAGAACAGTTGTCAGCTGACCGTCCCAGCAGAAATTGATGTGGAGAAATATGCAGTGGCAGAAAACTCAGTCAAAATAGATGACACTCAGCCCACTGTTTGGCCTTCAAAGGACGTGAGGGACGACTACATTTTCGAGTGTGAGATGGGAGGCCAGCCTCAAAGAACAAAAGTCACTATCTTCCAGACTATGGGCGACCCGCTGGTGTACGGGAAAATCTACAGCGCCAAAGACTCCAAATCAGAGGAGGACGTCACAGACCTGCACCTCATTCACCCACCATTCCTCATAGGTTCAAAGACAGACGCTGATCGGTTTGTAACGCAGTATAAAGAGGTGTATGAACGGGACGTGAAGTGTCAGGTGAAGATGTTGCACAACTCAGGCAGCGCAGGGTCACAGCTCTCCCCCTCCAGGGAGAACGAGGCTGATGGTTTCTCAGCGCTGGTCCAGTCTTCGGTTTTAGGAAAGGGTGTCAAACACAGACCTCCTCCTATTAAACTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGGAAACCTGTACAGTACACAGGCCTCCAGCGGCCATCTCAAGTGCCCGACTCCTCCGCCCACGAAGAATCAGTCGCTCTCCCGGAAACACTCCATGGAGCTTGGCCTGCTGTCCCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCTACGCCCACACCCACCAATACGCCGTGTTCTACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCAGTAACGCCCACCCCTCAGGACCCCACCCTTCCACAGCAACCTACCCTAATGACTCCCTTCGCCCAGCAACAGATGGCCCTGCCCGTCATGACTATTCCCCTGCCCACGTCCAGTACCACATCTTCACAGGTCATGACCAACCCTGCAGGGCTGAACTTCATCAATGTGATGGGCCAAGTTTGCAGTCCACAGACCCTGATGAGCGGTTCTAACCCAATGCTGGGTTGTAGTCCTGGTATACCCCTGAGTGGACTTCTGCCCTCTGGTGGTCTTATGTCTGGAGCTCTGCCTGCCATGCAGCCTGCAGCTCCAGCAGGTGGGCCGTTTGGCCTGAACAACAGCCCGGGACTGCGACCGCTTAACCTTCTTCAGCTCCCTACAGGACCACTGATTTTTAACTCTCTACAGCAGCAGCAGTTGTCTCAGTTCTCCCCTCAACAGCAAAGCAGCCAGTCCGCCACATCCAGCCCCCAGCAGCAGGGGGAGTCGGCTGACTCGGGTCTGACGGCAGAACAGGGTCTGACCGCACAACAGACGGCAGTCATCAATCTCACCGGAGTGGGGGGATTCATGTCCCCTCAGGCAGCAGGTATAGACTCATTCACCGGATACATGCATTTCATTTCTCTGCTACTCCTCTCACTGTTATTCAAGTACATCTCTAGTCCAGATATCTCTAACAGACACTAACACAACGAGTAGACATACTAATGGATTTAGATTTTGTAGTGTGTCATACTAATCTCAACATAGATCAATCGAAGTTAATTAGACCTGTTTTTTGACTATTTGGGTTTGTCATTTAATTAA

Function

symbol description
supt20 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component).
supt20h Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of gluconeogenesis and positive regulation of transcription by RNA polymerase II. Part of SAGA-type complex.

GO:

id name namespace
GO:0000124 SAGA complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16769537_16780398.mRNA False 2201 mRNA 0.51 17 16769417 16780398

Neighbor

gene id symbol gene type direction distance location
CI01000304_16765458_16765853 NA coding downstream 3564 16765139 ~ 16765853 (-)
CI01000304_16754929_16761111 ALG5 coding downstream 8306 16754724 ~ 16761111 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding downstream 17739 16745703 ~ 16751678 (-)
CI01000304_16722727_16724691 CCNA1 coding downstream 44569 16722567 ~ 16724848 (-)
CI01000304_16711244_16719831 SPG20A, SPG20 coding downstream 49586 16711244 ~ 16719831 (-)
CI01000304_16783635_16804462 CLG3H21ORF91 coding upstream 3138 16783536 ~ 16804462 (-)
CI01000304_16816039_16828777 RIPK4 coding upstream 35052 16815450 ~ 16829000 (-)
CI01000304_16838208_16848663 POM121C, POM121 coding upstream 57349 16837747 ~ 16849079 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC coding upstream 74431 16854565 ~ 16860911 (-)
CI01000304_16868092_16872772 SMG8 coding upstream 87484 16867882 ~ 16872772 (-)
G428681 NA non-coding downstream 160403 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 174908 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 488896 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 549004 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 549525 16218523 ~ 16219892 (-)
G428707 NA non-coding upstream 31786 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 98671 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 106056 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 134411 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 170803 16951201 ~ 16955072 (-)
G427376 NA other downstream 1508012 15258964 ~ 15261405 (-)
G427423 NA other downstream 2407525 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2481813 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2499846 14265476 ~ 14269571 (-)
G427309 NA other downstream 2561118 14181932 ~ 14237078 (-)
G429331 NA other upstream 1143465 17923863 ~ 17924684 (-)
G429499 NA other upstream 1457321 18237719 ~ 18238319 (-)
G429673 NA other upstream 1806044 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location