CI01000304_16854877_16860888 (YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC)


Basic Information

Item Value
gene id CI01000304_16854877_16860888
gene name YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16854565 ~ 16860911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16854877_16860888.mRNA
CTTCACCACGGCCCTCACCTGCGTGCTCCACTGTTTCTCCTGTGAGTCGTCCTGGGCTGACCGGCCCTTTCTGCTTCGCCCCCGCGCCGTCTCCCCCACCACGGTCGCCATGACGCGCTCCAAAACCTTTCAGGCCTACCTGCCCAACTGCCATCGCACCTACAGCTGCATTCACTGCCGAGCGCACCTGGCCAACCACGATGAGCTCATCTCAAAGTCTTTTCAAGGGAGTCAAGGCAGGGCCTACCTCTTCAACTCAGTGGTGAATGTGGGCTGTGGCCCAGCAGAGGAGAGGGTACTGCTGACCGGTCTCCACGCGGTGGCCGACATCTACTGTGAGAACTGTAAAACCACTCTGGGCTGGAAATACGAGCATGCCTTCGAAAGCAGTCAGAAGTACAAGGAGGGCAAATTCATCATCGAGTTGGCCCACATGATCAAGGACAACGGGGAGTGCAAAGTGAGGCACAAATCGATGTTTGCTCTCCTCTGGGTTGGCCAAGGTCACAGTTTTGTCCCACGCTCAGGTTTAACTAATGGCTGGATCCATGGGCACAGGTCGCGTACATTAGCTAGAGCCAAGTCTTTAGCCCCAGTCGCAGCTGAGAAAAGCAGCTCTGAAAGGGATCTGAGGCATGATGTCCCATTCAGGCTCATTAGTTCCCCCCAGCCAACCACAAATCAGGTGGTAAACCAGACTTTCTCACCACGTGTTATGGGGAAGAAAGTGACTGATGGCTAGTAAATGTGGCAATTGTATGAGGTAATCCAGCAGGGGCTCGTCAATAAA

Function

symbol description
ypel2b Predicted to enable metal ion binding activity. Orthologous to human YPEL2 (yippee like 2).
ypel2a Predicted to enable metal ion binding activity. Orthologous to several human genes including YPEL2 (yippee like 2).
ypel1 Predicted to enable metal ion binding activity. Is expressed in several structures, including axis; corpuscles of Stannius; mesoderm; nervous system; and neural plate. Orthologous to human YPEL1 (yippee like 1).
ypel2 Predicted to enable metal ion binding activity. Predicted to be located in nucleolus.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16854877_16860888.mRNA False 790 mRNA 0.55 6 16854829 16860888

Neighbor

gene id symbol gene type direction distance location
CI01000304_16838208_16848663 POM121C, POM121 coding downstream 5750 16837747 ~ 16849079 (-)
CI01000304_16816039_16828777 RIPK4 coding downstream 25829 16815450 ~ 16829000 (-)
CI01000304_16783635_16804462 CLG3H21ORF91 coding downstream 50367 16783536 ~ 16804462 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H coding downstream 74431 16769417 ~ 16780398 (-)
CI01000304_16765458_16765853 NA coding downstream 88976 16765139 ~ 16765853 (-)
CI01000304_16868092_16872772 SMG8 coding upstream 6994 16867882 ~ 16872772 (-)
CI01000304_16874485_16876468 NA coding upstream 13387 16874275 ~ 16876468 (-)
CI01000304_16902774_16907628 RHBDD2 coding upstream 41212 16902100 ~ 16908819 (-)
CI01000304_16929873_16945323 GABRR3A, GABRR3 coding upstream 68560 16929448 ~ 16946827 (-)
CI01000304_17003708_17006278 NA coding upstream 142477 17003365 ~ 17006383 (-)
G428707 NA non-coding downstream 42362 16812184 ~ 16812467 (-)
G428681 NA non-coding downstream 245815 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 260320 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 574308 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 634416 16220029 ~ 16220413 (-)
G428710 NA non-coding upstream 18181 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 25566 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 53921 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 90313 16951201 ~ 16955072 (-)
G428735 NA non-coding upstream 100211 16961099 ~ 16961332 (-)
G427376 NA other downstream 1593424 15258964 ~ 15261405 (-)
G427423 NA other downstream 2492937 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2567225 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2585258 14265476 ~ 14269571 (-)
G429331 NA other upstream 1062975 17923863 ~ 17924684 (-)
G429499 NA other upstream 1376831 18237719 ~ 18238319 (-)
G429673 NA other upstream 1725554 18586442 ~ 18591856 (-)

Expression


Co-expression Network