CI01000304_17579139_17581078


Basic Information

Item Value
gene id CI01000304_17579139_17581078
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17579118 ~ 17581601 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17579139_17581078.mRNA
ACAACCTACATGAAAGAGGTTCATACAGTAACAATGTCTTAAATGAGCCTTTTTTTATTTATTTATTTATTTTTTTTAACATTTCTTATTCTAACACCCACAAATCCAACTCATTCTATCTGAAGGTTTTGCTATATGGGATCCCTGGTGCATTTTACTCAAACAAAATGGTTTTGACACACATGTTGACTTCTGACATAACAGTTCTCTAGATAGCTTTTGGGTTGTATTTTGTTAAATATTTTAAACAAAATAATTTAAGAGACCTGACTTTACACTCAGTGAGTCTGGAAATGTGCAGAGACATTTTAATGCTCCTCTAGATGATTTGCCAGAAAGTGATGTTTTACCCAACTTCACCCCTCTTCTGTTTATAAATGTTTTATTTAGCTCTGCATCATCTTATCATCCTCTCTGTTCTTTGACATGTTTAGGACTTCAATCAACCACACTCAAATCAGCTTCTGTAATGACGCTGTGAACTCAGGTCACATTGAAGCAACGTTCAGTTTGATTTCTCATCATGAATCTGACTGAGATTTGCGACAACGCTAAGAAAGGAAGAGAATATGCACTACTGGGGAACTATGATTCGTCCATGGTGTACTACCAAGGTGTTATACAACAGATCCATAAGCACTGTATGTCCCTCAGAGATCCTGCCCTGAAAGTCAAATGGCAACAAGTTCGGCAGGAACTGGCAGAGGAATATGAGCAGATGAAAAGCATCGTAAACACCCTGGAGAGTTTCAAGGTGGACAAACCAGTTGATTTCCCCAACCCTTTGCCTGAAGAGAGCCCAAGGGACCCTGCTGTCTGGCCTCCCCCAACCCCAGCGGAGCACAGGGGACCTGCCCAGGTGAAGAAGCCAGTCACTGTATCAAAGCCTCAGAGGAAAGAGTCACCTGGGATGCAGCATCGTGGACCTGTGGGGAGGGGTCAGCCGAACGTCAAATCAGATAGACCGAACACTCGTGATGGCCGTGGAAATAAAGCTAAGGAGGAAAAAAGTAAGAAGAATGCCCAGGAGGGTGCTGCTGATGTGGAACAGAGGAAGTTTGATGGCACTGGCTATGACAGCGATCTGGTGGATGCACTAGAGAGAGATATTGTGTCCCGGAATCTCAATATCCACTGGTATTGTGCCATTTTACTACTAGTTTTACTTTTCAAGTGCTTATGATTATATAGTTTACAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17579139_17581078.mRNA True 1204 mRNA 0.42 4 17579118 17581601

Neighbor

gene id symbol gene type direction distance location
CI01000304_17571701_17576895 KATNAL1 coding downstream 2223 17571224 ~ 17576895 (-)
CI01000304_17538160_17540583 UBL3A, UBL3.S, UBL3 coding downstream 38535 17538160 ~ 17540583 (-)
CI01000304_17488992_17490128 NA coding downstream 88624 17488124 ~ 17490494 (-)
CI01000304_17413669_17414667 OR109-1 coding downstream 164210 17413514 ~ 17414908 (-)
CI01000304_17369357_17411120 NA coding downstream 167915 17369154 ~ 17411203 (-)
CI01000304_17582446_17582872 NA coding upstream 643 17582244 ~ 17582872 (-)
CI01000304_17584110_17585466 HMGB1B, HMGB1, HMGB1A coding upstream 2259 17583860 ~ 17585669 (-)
CI01000304_17609266_17610594 MEDAG coding upstream 27642 17609243 ~ 17610594 (-)
CI01000304_17613042_17613658 NA coding upstream 31065 17612666 ~ 17614053 (-)
CI01000304_17614848_17642103 NIPBLB, NIPBL coding upstream 33124 17614725 ~ 17642103 (-)
G429220 NA non-coding downstream 10301 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 14720 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 49407 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 55403 17523382 ~ 17523715 (-)
G429172 NA non-coding downstream 219026 17344902 ~ 17360092 (-)
G429202 NA non-coding upstream 78273 17659874 ~ 17704143 (-)
G429224 NA non-coding upstream 137345 17718946 ~ 17794447 (-)
G429300 NA non-coding upstream 239159 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 240558 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 243841 17825442 ~ 17825664 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 711880 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 798159 16769417 ~ 16780398 (-)
G427376 NA other downstream 2317713 15258964 ~ 15261405 (-)
G427423 NA other downstream 3217226 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3291514 14286960 ~ 14294449 (-)
G429331 NA other upstream 342262 17923863 ~ 17924684 (-)
G429499 NA other upstream 656118 18237719 ~ 18238319 (-)
G429673 NA other upstream 1004841 18586442 ~ 18591856 (-)

Expression


Co-expression Network