CI01000304_17705069_17711334 (DNAJB13)


Basic Information

Item Value
gene id CI01000304_17705069_17711334
gene name DNAJB13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17705033 ~ 17712467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17705069_17711334.mRNA
AAATATATTTTTAAACGTATTTTTTTTCTAGTGGAAAATGTAATAGTTCTTGAGCAAGCGAGCGGAATCCGGAATATTGTCTATATGTGGAAACAGGGCGGGACTCCAAACAAGTTAGATTGAGCTCTGCAAGCCACCGGCGCCACGTCACGTTCCTAGCGTCATTTGCCCTGCAGCATCATCATCGCATTCCGCTACCCCTTGAACTGTGAACAGGGAGACTTTTCCAGGATTAAATTACTCTGTTGCTCCCAATATTAATACATTATACAATGATATTCAAATGGAGGATATATTACACTAACGCTTGCTTTCTGTGCCAGTTTTTATTTATGATTATTTCAAATAGCTAGTGTAGAACCATTTGATATTAGAACAGTTTTGTGAATGCTGTCTTTCTAATTTTTTTTTATATTTAATATTTTCAAATTAATATTTTATAATGTTTTTCTAAGCCTAATGATAACTTCTGAATGCTAAAGGAAATAAATCATACAGATTGTAACTGCATGTGACGACAAAACCTGCATCAATCTCCAAACCAGTTCCACGATAGTAAAGAAGATACAATTATTTCACGCATCCGAGTAGGGCATACTAGATTAAATCATTAAAACAGAAAAACATGAATCAGGTCAATGTATTTATTATAATCAGGCAGAAACAATAGAGCATGTTTTAATAAAATGTAAAAAAAAATACGAAAAAGAAAGGTTAAAACTCATCAATGAAGTTAAAAACATGGGTGTTTTAAAAGAACATGCAGAACAAAGTAGAATCTATGGTGCTATTATAAAATATATTAAAGAAATAGGAATAATCAATAGAATTTTTTTTATTATTATTAGCTGCTTATTAGCGCTTCACACTCCAGTCCAGTTGGTGGCGGTAAACGCACCAAAAGTTGGTTTGCCATCCGCCATAAAATGTCAGTAGAAGAAGAAGAACCCAGTTTCACGTGTGACGCTTTTGCTCCAGCAGATGGCAGCAATGTGCCGAACGAGCGTAAATTCTTCTGCTGGATTCCGTGAAGAAGATCGGGCTCAATACATGCGCTTATCGGATTGATATTACCTGGTTTTGGATGCTTGTTTTAAAACTTTACTACTGGATTAATATATCAACGTGAAATAATGAACAATTTACTGAATAAGGTTTTTCTGCTCCAGAACACACGGGCGCTGGTGTGTGCAGCATCATCGGTCCATTATAGTATGTGGGTGTTTCTACAACTACTGGCACTTTTGACTCTCCCAATTTTAAAAAAATCAACCTCTATGAATTTCAATTTATATAATAAGGACTCAAAAGTGTGGGACAGACAGTATAGATCAATGCCCACACATGGTATTGGAAGATACAGGCATCTTCTTCCAAAAACATTGCCAAAGAAGAAGAAGGACAGAATTCAGGCAAAGCAGATCAAAGCAGTGACAGCCACAGAGTTTGGCGTTCTGAATGTGTGTGTTTCCGGTTATGACATGACTTTAGTGGAACATTATTCCCAGTACATCCACAATCTCTGCAGTCACTTGGACATCAAAGTCGATGAATGCTATGCCCTGCCTACAAAAAGCACAGAGGTCATGGTGATGCAGGAGCAAGGCACTAAGATGTATGTAGATGGAGTCCTGAAAACCCATGAGCGTGTGGTTCAGATCAGTGAAATGAAGGCAACACTTTTTCCCATACTTGCGGAAGTTCTTCTGAAGAACCAGCCTGAGGGAGTGCAACTCTGTATAAAGCAGCACACGGAAGCAGATTTTCAAGCCCGGTACCGGCGGCTCGCGCTGAAGCATCATCCTCGCAGCAGCAGCCACGCGAGCGCCGCTGAGCGCTTCACACTGCTCGCGGAGGCGTTTGACGTGCTGAGCGACCCACGTAAAAAGGCCACATATGATAAGTTTGGAGAGGAGGGTTTAAAAGGAGGAATCCCATCTGAATTGGGAGTGAATGGCGCCTGGTCATCAGGATATGTCTACCATGGAAATGCAGATGAAACATTCCGACAGTTTTTCGGAGGAGATAATCCTTTTGCAGATTTTTTCACTGGTGATGGCAGTGAGGTCAACACAGCTTTTCAGAGCCTGCGTGGGCAAAAAGAAAAGCTACAGGATCCACCAATAGAAAGAGACCTTCATCTTGCCTTGGAAGACCTTTATTATGGATGCACTAAAAAAATTAAGATATCCCGTAGGGGACCAAACAACATCCCAGCAGATATTGTGTTTATCATACGCCAAAAGCATCACCCGCGCTTTGTCCGCCAAAATGATGATCTGTACTACACAGCAAATATTTCTCTTGAGAAGGCTTTGACTGGTTTCTCAGTGGAAGTTGAGACACTAGATGGCAGGCTTCTCAACATCCCTGTCAATGACATTGTGCACCCTCAGTACACCAAGGTTGTGACCGGGGAGGGAATGCCGCTAGCCAACTGCCCATCCAAGAGAGGCGACCTGATCATTCGCTTCATTACACATTTCCCAGAGAAGCTCTCGGCTGAAAGGAAACATCTTCTAAAACAAGCCCTCTCATCAAAACTAATCCAGGCTTCTTAAAGGCTTCGTTAATAGAATGTTGATTCTAAAAATGAA

Function

symbol description
dnajb13 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Is expressed in Kupffer's vesicle; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 34. Orthologous to human DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17705069_17711334.mRNA True 2597 mRNA 0.41 14 17705033 17712467

Neighbor

gene id symbol gene type direction distance location
CI01000304_17673830_17688501 RSF1B.1 coding downstream 16532 17671998 ~ 17688501 (-)
CI01000304_17652862_17661953 SLC1A3A, SLC1A3B, SLC1A3 coding downstream 42781 17651127 ~ 17662252 (-)
CI01000304_17614848_17642103 NIPBLB, NIPBL coding downstream 62930 17614725 ~ 17642103 (-)
CI01000304_17613042_17613658 NA coding downstream 90980 17612666 ~ 17614053 (-)
CI01000304_17609266_17610594 MEDAG coding downstream 94439 17609243 ~ 17610594 (-)
CI01000304_17722987_17728462 PLEKHB1 coding upstream 8740 17721207 ~ 17728565 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding upstream 35919 17748386 ~ 17752035 (-)
CI01000304_17753888_17759116 DHRS13A.1 coding upstream 41256 17753723 ~ 17759116 (-)
CI01000304_17761838_17774880 PHF12A coding upstream 49083 17761550 ~ 17774880 (-)
CI01000304_17776984_17798369 NA coding upstream 64446 17776913 ~ 17798369 (-)
G429202 NA non-coding downstream 890 17659874 ~ 17704143 (-)
G429220 NA non-coding downstream 136216 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 140635 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 175322 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 181318 17523382 ~ 17523715 (-)
G429224 NA non-coding upstream 6479 17718946 ~ 17794447 (-)
G429300 NA non-coding upstream 108293 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 109692 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 112975 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 115534 17828001 ~ 17828552 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 837795 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 924074 16769417 ~ 16780398 (-)
G427376 NA other downstream 2443628 15258964 ~ 15261405 (-)
G427423 NA other downstream 3343141 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3417429 14286960 ~ 14294449 (-)
G429331 NA other upstream 211396 17923863 ~ 17924684 (-)
G429499 NA other upstream 525252 18237719 ~ 18238319 (-)
G429673 NA other upstream 873975 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1701804 tmem19 non-coding NC_048585.1 CM023239.2 2509058 ~ 2511488 (-)
eurasian perch (Perca fluviatilis) G163055 NA non-coding NC_053127.1 CM020924.1 3659962 ~ 3660294 (-)
bowfin (Amia calva) AMCG00016343 NA coding CM030122.1 CM030122.1 16861180 ~ 16864392 (-)