CI01000304_17761838_17774880 (PHF12A)


Basic Information

Item Value
gene id CI01000304_17761838_17774880
gene name PHF12A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17761550 ~ 17774880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17761838_17774880.mRNA
ATGGGAACTGTTTTCTCCCACATGCAGCAAACCTATGAGACTCAGCAAATCCAGACTCTGCTGGCGCCGCCCAAGTCTGAGGATGGAGAGAAGAAGAACAGGAAACCGGACAGGAGTACCAGGAGAGCCGGCAGGGCCACCAATCACGATACCTGCGACAGCTGCCGGGAAGGAGGGGACCTGCTGTGTTGTGATCACTGCCCCGCTGCCTTCCATCTACAATGCTGTAACCCTCCAATGAGCAGAGAAATGCTGCCCCCTGGTGACTGGATGTGTCATCGCTGCAGCGTTCGCAAGAAGAAAAGGGAACAGAAGAAGGAGCATATTAACGGTCTCTTGGAGCGTCAGCTAGGGAAGCAGACACATTCTCCGGCTCCTGAGCTGGAATGTGGGACATTACGTCTGGATCCCTCTGTGGGGTCGGGCGGCACAGGGCTACGGGCTGCTGTTGCTCAGGTACGACTCTTGGAGGGGCGACCCAACAGCCGGCCCGTGACCCCCAACTCCAACACTTCTTCCGCTGACACACCCACACCCTCCGAGCAGAATGACATGGAGGAAGACCTCCTGGACGTGGAGGACGAGGCACAGTGTTCTGAACCAGAGATCTTGAATACCACAACCACCCTCAAAAGACCATTTGACCTCCTAATCGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCAAATGACCTCACCTGCACGACTGCACTTCCAGGCACCAGCAAAAGAAGACGAAAAGACGAGTTATCAGGCAAGAACGTTAAACGCCCACAACATGAGCTGGACAATCATGGACTAGTTCCACTGCCGGTGAAAGTGTGTTACACATGCAGCAGGAGCTGTCGAATGGCTCCACTGATCCAGTGTGACTATTGCCCTCTCTTGTTTCATATGGACTGTTTGGATCCGCCTCTCACTGCCTTCCCTACAGGCAGGTGGATGTGTCCAAACCACATCCAGAACCTGGTTCTGAACCAGAGAACCTTCACCCTCAGCAACCGTTGCCAGTTATTTGACCAGTTTCAGGACCGCATATCCCAGCATGCCATCAAACTCGACTTCTTGCAAAGGATACATCGCCAGCGCCCCCCTATACGGCGGTCAGCTTATGCTCAAAGCAAAAAGACTCTGAAGGTTCCAGATGCCATAAAGTCACAGTATCAAAACCCGCCCACTCTGATGGCCCCGGCAGGGATCCGTGAAGGGGAGCTTATCTGCACCGGCCTTCCAGAAGCTTTTGTCCCACAGCACTTAGCCAGTGAAGACGAACAGTGTCAGTGGCTCAAAGACGTCATCTCGCTGCAGTGCAGCATTATGAGGCATTTATGGAACAGACAAACATCTCCTTGGGATTCAGAGCACACAGAAAAGACTGATCTGAAGCTCAGAGACTCCTGCCAGAGCGCCGCTTCACAGGGCAGCCAGAGCGTAGCGCCAAAGGTTTCCTGTAGTTCATGTACTGATGGACTGTGTCAGAACTGTAAGACCACAAATGGTCCTGTAGAACGATTGGTGCAGTCCAATGGAACGCAGGGTCCTGTTAGAACCCAAGAAAAAACAGCTGACCATTTACCCATACCCGCTCCACCAAACCATGCCAACTCTGGAGCCATTATCAAGACAGAGGATGCCAGTTTAAAGCCCTGTAGTGGCACAGAGGTCTCTGCTTGTGCTTGTGTCAAATCTGAGCCCAGCACTCCACTATGTGACCATAAAAAAACTCCATCAGCTTCAGACGCAGCAGCAGCAGCAAAGCTCTCAGCCTCTACTGTATCTACAGGAGTGCATGCTGTTAAACCGCAGAAAATCACCACATCAAAAGATGGAAAGGCCGGCTTGGACTCTGTGATGGCAGGCAGTGGGGACGTCTTCTCTTGCACAGAACCTAACCTGTCAGAGCTGACCGGTCGAATAAAGGACATCATGCCGAGCAGTGGAGAAGTTGAGCTTGGCTCATTGGATGAGAAATTTATCAAGCTCTTGGCCTGGCAGCGGATTCAGCAACTCTTTGAGTCAAAAACCTCTCCTGTTCAGAGCAGTTCTCCTTCATCCGTGTCACCCGCTCATAGGAAACATAGTGAAGCCCAAAGCAGGGAGGTGCAGGCGAGAGCTTCGTTCTGTTCGGTCTCGGGAAAGGGAACTGCTGTCAGTATGTGCTACAGGAGTCTGTACATCGGGACAGGTGCTGATATGGATGTGTGCCTTACAAACTACGGGCATTGTAACTACGTTTCAGGGAAACATGCCTGTATATTTTATGATGAGAATACAAAGCAGTATGAACTGCTGAACTACAGCGAACATGGGACAACCGTTGACAACGTATTATATTCCTGTGACTTCTCTGAGAAGATGAGCCAAAGCCCATCCAGCAACCTGCTCACTAAAGTGCAGAACATCATCCGACGCTGCAGGAAAAAGGAGCAGGAGGAGTCTGCAACAGGCGTGGCCTCTGCAACAGAGGGCAGAGTTATGAGCTGCCAATCTCACGATGCTCCCATCATTCCCTGTAACTGTAAAAACAGCGGCTCCAGTTTGATCGGAGGCAATGGTGCGGGATGGGAAGGCACTGCACTGCTCCATCACGGAAGCCACGTCAAACTGGGCTGCTTGCAGTTTATATTCAGCATCACGGAGTTTGCCAACAAGCCACTTAAAGAGGAGCTCATCACCTGCAGCCTCACTCCCACACCTGGCCAACAGGGGGAGCAGCTGAGCAAGGTCACGCCTCCTTCGCTCCAACACAACCTTGTAACTTAACCCCTAAAGCACCGACCTGTACAGTTTAAACGGTTTCCTAATTATTTAATGGTTTATACATTTGCATGAGGTGACATTTTTTTTCTAATTTCTTTAAGACTCTTTTGGCAGGTTGCACATTTTGTGTCTCAATGCAAGACTTGCATTTTTAAAGGGAAACTTTGATCATCCTCAATGCTCTGAGAATCAATGAGCAGTTTTCACATGTAAAGAAATCAAAACATGTTCTATTTTGTGCCAGTAACAATAGTTTTTATACAAACATGCATTTTCTTTTCTTTCAAAAAA

Function

symbol description
phf12a Predicted to enable transcription coregulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of Sin3-type complex. Predicted to be active in nucleus. Orthologous to human PHF12 (PHD finger protein 12).

GO:

id name namespace
GO:0070822 Sin3-type complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17761838_17774880.mRNA True 3060 mRNA 0.50 15 17761550 17774880

Neighbor

gene id symbol gene type direction distance location
CI01000304_17753888_17759116 DHRS13A.1 coding downstream 2434 17753723 ~ 17759116 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding downstream 9515 17748386 ~ 17752035 (-)
CI01000304_17722987_17728462 PLEKHB1 coding downstream 32985 17721207 ~ 17728565 (-)
CI01000304_17705069_17711334 DNAJB13 coding downstream 49083 17705033 ~ 17712467 (-)
CI01000304_17673830_17688501 RSF1B.1 coding downstream 73049 17671998 ~ 17688501 (-)
CI01000304_17776984_17798369 NA coding upstream 2033 17776913 ~ 17798369 (-)
CI01000304_17837247_17882808 MYO18AA coding upstream 62367 17837247 ~ 17883960 (-)
CI01000304_18007357_18007779 NA coding upstream 232175 18007055 ~ 18008022 (-)
CI01000304_18010568_18011800 NA coding upstream 235374 18010254 ~ 18011834 (-)
CI01000304_18018841_18019759 NA coding upstream 243961 18018841 ~ 18020494 (-)
G429202 NA non-coding downstream 57407 17659874 ~ 17704143 (-)
G429220 NA non-coding downstream 192733 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 197152 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 231839 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 237835 17523382 ~ 17523715 (-)
G429300 NA non-coding upstream 45880 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 47279 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 50562 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 53121 17828001 ~ 17828552 (-)
G429316 NA non-coding upstream 124786 17899666 ~ 17899895 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 894312 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 980591 16769417 ~ 16780398 (-)
G427376 NA other downstream 2500145 15258964 ~ 15261405 (-)
G427423 NA other downstream 3399658 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3473946 14286960 ~ 14294449 (-)
G429331 NA other upstream 148983 17923863 ~ 17924684 (-)
G429499 NA other upstream 462839 18237719 ~ 18238319 (-)
G429673 NA other upstream 811562 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location