XLOC_012745


Basic Information

Item Value
gene id XLOC_012745
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18827219 ~ 18828485 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026893
TTGGTGGATCACACAGCTACTGTACGAATAGACAAATCTGTGATTGTGAAGGACTCGTTCGCTATGGATGCTCACTTAAATCAGTCTTCAGACAACCATAATCGCGAGTGGTCATTGGTTGTTCTGACTTTGGACCCAAAGGTGAACGTACAAGAACTGATTGAGTCAAtgaaacagttcacccaaatcCACTCTTTGGATCTGTCCTATGATGAAGACAATAATTGCAGATCCATTTATGTGACTTTTGAGCATTCAGGACGGGAACAGGAACCTCATCCTGTGCTCCCCACATACCACTATATTGAGCGGAAGACACTGCTTGTGAGCAATCTGCACCCAATGGTCACCGAACAACAGCTTATTGAAAAGTTTGGTCCATTGGGGTCCATCTCGACTGTGCAAGTGTGCAGAAACAACATCGTCTCTCCTGTGTATGCCTTTGTGACTTTCCATCATCGACGTGATGCAGTGCGAGCACAAAAAGCTCTGAACTTCACTCATTTACTGAATAAACCTCTGATCATCATGTGGGGCCCAGACAAGACAACTGAGGTCCTCTCAGATTATGACAGCAGCTCTCAAAGACAAACAGAGGAGAGAGAGGCAGCTGGAGAAACAGAGGAGAAAAAGACCAGTGGAGAAACAGAGGAGAGAGAGGCAGCTGGAGAAACAGAGGAGAAAAAGACCagtggagaaacagagagagaagcAGCTGGAAAAACAGAGGAGAGAGCGAACAGCGAGTCTTCATGGAGAAGAAGGATCTCCAACAATGTGAAAAGTGCTGTGAAAGCCACGGTAAGCAGTCCAGCAACCTGGGTCGGAGTCGGCATAGGTGTCTGTGCTGCTTATGCCTACTTCAGGAGCAGGAGCTAG
>TCONS_00025449
GACAAATCTGTGATTGTGAAGGACTCGTTCGCTATGGATGCTCACTTAAATCAGTCTTCAGACAACCATAATCGCGAGTGGTCATTGGTTGTTCTGACTTTGGACCCAAAGGTGAACGTACAAGAACTGATTGAGTCAAtgaaacagttcacccaaatcCACTCTTTGGATCTGTCCTATGATGAAGACAATAATTGCAGATCCATTTATGTGACTTTTGAGCATTCAGGACGGGAACAGGAACCTCATCCTGTGCTCCCCACATACCACTATATTGAGCGGAAGACACTGCTTGTGAGCAATCTGCACCCAATGGTCACCGAACAACAGCTTATTGAAAAGTTTGGTCCATTGGGGTCCATCTCGACTGTGCAAGTGTGCAGAAACAACATCGTCTCTCCTGTGTATGCCTTTGTGACTTTCCATCATCGACGTGATGCAGTGCGAGCACAAAAAGCTCTGAACTTCACTCATTTACTGAATAAACCTCTGATCATCATGTGGGGCCCAGACAAGACAACTGAGGTCCTCTCAGATTATGACAGCAGCTCTCAAAGACAAACAGAGGAGAGAGAGGCAGCTGGAGAAACAGAGGAGAAAAAGACCAGTGGAGAAACAGAGGAGAGAGAGGCAGCTGGAGAAACAGAGGAGAAAAAGACCagtggagaaacagagagagaagcAGCTGGAAAAACAGAGGAGAGAGCGAACAGCGAGTCTTCATGGAGAAGAAGGATCTCCAACAATGTGAAAAGTGCTGTGAAAGCCACGGTAAGCAGTCCAGCAACCTGGGTCGGAGTCGGCATAGGTGTCTGTGCTGCTTATGCCTACTTCAGGAGCAGGAGCTAGTGTGGACACATTCTAAAAGACGAGAAGGCCTGCCTCACAATCTCCACTCATCATCCCCAGAGTGACCAATCACTGCTCCAGAAAGAACTTGATTACCCCAGCAGGCCAAACACTTGcaataaatgtgaattgaataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092711

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026893 False 879 lncRNA 0.47 1 18827219 18828097
TCONS_00025449 True 987 processed_transcript 0.47 3 18827249 18828485

Neighbor

gene id symbol gene type direction distance location
XLOC_012743 NA coding upstream 14311 18740827 ~ 18812908 (+)
XLOC_012744 NA coding upstream 27167 18798840 ~ 18800052 (+)
XLOC_012742 NA coding upstream 56325 18733147 ~ 18770894 (+)
XLOC_012741 BX649641.6 coding upstream 101126 18725978 ~ 18726093 (+)
XLOC_012740 NA coding upstream 117064 18708889 ~ 18710155 (+)
XLOC_012746 pllp coding downstream 32874 18861359 ~ 18870632 (+)
XLOC_012747 arih1 coding downstream 51248 18879733 ~ 18901017 (+)
XLOC_012748 BX571681.4 coding downstream 81881 18910366 ~ 18911615 (+)
XLOC_012749 NA coding downstream 140405 18968890 ~ 18969766 (+)
XLOC_012750 hacd3 coding downstream 153592 18982077 ~ 18995283 (+)
XLOC_012752 BX548060.1 non-coding downstream 197504 19025989 ~ 19033213 (+)
XLOC_012756 NA non-coding downstream 584612 19413097 ~ 19416040 (+)
XLOC_012759 NA non-coding downstream 696356 19524841 ~ 19620953 (+)

Expression


Co-expression Network