CI01000306_08533490_08558727 (SEMA3FB, SEMA3F)


Basic Information

Item Value
gene id CI01000306_08533490_08558727
gene name SEMA3FB, SEMA3F
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8533428 ~ 8559154 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_08533490_08558727.mRNA
ACAAACATTTGGAAACAAGTTGAAGTGTTTTTTTTTTTTTGTTTTTTTTTTCGGCATGTCCCAGATCTCAAATGTTCGTATGTATCTCTTTAAGATTAGATTGGAAAAATGTGAAGACATAATTACAGATTCGGTTGCCATGTTTTGTGTCTGCAATAACAAACCCTGTATTATCTCATAAGATGAAATAGATGGAGTATTCTTCGTTGTGAATTGTGGCCAAAACTATTATGATGTTGTCAGGTTGCCATGAATTTATGATATGTATTCAAGCAATTATGGAAATGGAATGAAACGGGGAGTGGAAGCACTTTCTCTCTTAACTTCTGCGTAAATCTTTCTAAAACAATATCACAACAATAAATGTCTTGTCTGATTTTGACTGAATTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGCAGATATGAGGTCTACAGGTACAGCCCATTACTTCTCTTTCCTGTTGAACACATCAGACTATCGCATCTTGCGCATGGATGAGGATCACGACCGCATGTATGTGGGCAGCAAAGACTACATCCTTTCTCTGGACCTCCACGACATAAACCGAGAGCCCCTCATAATACACTGGCCTGTTTCCCCGCAGAGGAAGACGGAGTGTGTTTTAAGTGGCAAAGACACAAATGGCGAGTGCGGTAATTTCATCCGTCTGATCGAGCCATGGAACAGGACGCACTTGTACGTGTGCGGGACGGGCGCCTACAACCCTGTATGCACTTATGTCAACAGAGGACGCAAACCAATGACTGCCATGCATCTCCAGATGCCCCAGACCAGAGGAAGAACTAGTCGTGCAGCTGAACCTGAAACAGTGTTTGATGAGACAGGACTACAGGAATACGTGTTCCATTTGGAGCCCGGCAAGGAGGATTCTGGGAAGGGAAAGTGCCCATATGATCCAAAACTGAACAGTGTCTCCGCTTTGATTAATGGAGAACTGTATGCAGGGGTGTATATTGACTTCATGGGAACAGACTCTGCTATTTTCCGAACTTTGGGGAAAAACGCAATCATGCGTACTGACCAATACAACTCGAGATGGCTGAATGACCCCTCATTTGTCCATGTGCACCTTATCCCTGACAGCAATGAGAAAAACGATGACAAACTCTACTTTTTCTTCCGTGAGAAGTCTTCTGAGATGGGCCAGAGCCCCAAATCACAGTCACGCATCGGCCGAATCTGCCTGAACGATGACGGTGGTCACTGCTGCTTGGTCAACAAGTGGAGCACCTTCCTGAAAGCCCGTCTCATCTGCTCAGTCCCAGGAGCTGATGGGATTGAAACTCATTTCGACGAGCTCATCAGGTTTCAGTGGCCCTGTCCAATGTCGCCCACACCCTACTACAAAACCACATGCAAACCCTCTGTCCACCCACAACATCCTGGATCCCCTAATGTGGGCCTCCAGGTCTGCGTTTACACCGCGCCAGTCATTTCCAGACTAATTGGCCCCAGTGATGTTGGGAAACGGTGGGTTATGATCATGCTGGAATTTATTGCTGTTGCTCACATTAAAAGAGCAGATCTGGGCTCCCGAACACAGACGCTCAACACTTATAAACACGTTTGGCTCTTTATTAGTGGGGAGGATGTTTACACTGGCTCATGGAGAGGGGATGTGTACATACAGCCCACGCAGGACACTAAAAATCCAGTCATCTATGGGGTCTTTTCTGTGTCGGGTTCTGTATTCAAAGGCTCAGCGGTCTGCGTCTACTCCATGGCGGACATTCGGATGGTGTTCAATGGACCTTTTGCCCACAAAGAAGGTCCCAATTATCAGTGGGTGGCCTACACTGGAAAAATCCCCTACCCTCGTCCAGGAACATGTCCTGGAGGGACTTTTACCCCCAACATGAAGTCCACGAAAGACTACCCCGACGAGGTCATCAACTTCATGCGGAACCATCCCACCATGTACAACGCTGTGTATCCGGTGCACAAGCGCCCCCTAGTTGTCAGGACCAACGTGGACTATGAGTTCACCACCATCACTGTGGACCAGGTGACTGCTGCCGACGGCAACTATGAGGTGCTCTTCCTGGGTACAGACAGAGGTACAGTGCAGAAGGTTATCGTCCTGCCCAGAGATGACCTGCAGACAGAGGAACTAGTGCTGGAGGAAGTGGAGGTCTTTAAGGTCCCTACTCCCATCACAACTATGAAGATTTCTTCAAAACGGCAACAACTGTATGTGGCGTCTGCGGTGGGCGTGACTCATCTGGCCTTGCACAGGTGTGACGTCTACGGCGAGGCCTGCGCAGACTGCTGTTTGGCCCGTGACCCTTATTGCGCCTGGGACGGCAAGTCCTGCTCTAGATACTCGGCCTCGCAGAAGAGACGTAGCCGGCGACAGGATGTCAAATACGGGAATCCCATACGGCAGTGCAGAGGATACAATTCCAACCCCAATAAGAACACTCTAGAGACGGGGCAGTACGGGGTGGAGGGAAGCAGCACGTTTTTGGAATGCCAGGCCAGATCGCCTCACGCCGCCATCAAATGGCATCTCCACCGAGACAACAGCGATAGGAGGAGAGAGGTCCGCACCGATGGGCGCGTATTGAAGACAGATCAAGGCTTACTTCTACGTTCCCTCCAGTCCTCAGACTCTGGCACCTACGTCTGCACAGCCACTGAGAAGAACTTCAAGCACACATTGGTCAAACTGCATCTGGTGGTCTTGACCAACCAGGCCGTCAATAACATCCTGGTTGAAACGGGCCGCCCGGCGGTCTCTCCGCTCCAGTCCAGCGCCTGGACCCCCAGCGCCGGACAATACAAAGACCTTCTGACCATCCTCAGTCAGCCCGAGATGGGCCTCATAAACCAGTACTGCCAGGACTATTGGCAGTATGGAGACCCCCTGACGGGGGTCATCAAGGCCAAAGACCTCAAAGAGCTGAAGGAACAGAAGAAACCACGGAATCGCAGACATCACGGGGATGAAGAGGAGACATGAGGGGGTTTTCCAACCCCTGTTCCTATAGGAAAGACTTCTAAAAGAGGAAAACCTGGAAAAAA

Function

symbol description
sema3fb Enables neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; forebrain neural keel; hypochord; neural plate; and presumptive telencephalon. Orthologous to human SEMA3F (semaphorin 3F).
sema3f Enables chemorepellent activity. Acts upstream of or within axon guidance. Predicted to be active in extracellular space and glutamatergic synapse. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_08533490_08558727.mRNA True 3051 mRNA 0.50 19 8533428 8559154

Neighbor

gene id symbol gene type direction distance location
CI01000306_08521837_08523740 NA coding downstream 9658 8521033 ~ 8523770 (-)
CI01000306_08349295_08353547 TRAIP coding downstream 179881 8349156 ~ 8353547 (-)
CI01000306_08208426_08210350 NA coding downstream 323058 8208224 ~ 8210370 (-)
CI01000306_08143309_08144833 CHCHD4, CHCHD4A coding downstream 387028 8143139 ~ 8146400 (-)
CI01000306_08077693_08108117 DNAH1 coding downstream 425311 8077609 ~ 8108117 (-)
CI01000306_08596204_08597372 NA coding upstream 36721 8595875 ~ 8598404 (-)
CI01000306_08690665_08696165 ARL8BA, ARL8B, ARL8BB, ARL8A coding upstream 131511 8690665 ~ 8696165 (-)
CI01000306_08699884_08701812 BHLHE40 coding upstream 139415 8698569 ~ 8703451 (-)
CI01000306_08710919_08824478 ITPR1 coding upstream 150450 8709604 ~ 8824478 (-)
CI01000306_08862287_08863560 SETMAR coding upstream 302965 8862119 ~ 8863560 (-)
G436211 NA non-coding downstream 64828 8468362 ~ 8468600 (-)
G436198 NA non-coding downstream 90221 8442991 ~ 8443207 (-)
G436193 NA non-coding downstream 103054 8429759 ~ 8430374 (-)
G436180 NA non-coding downstream 121494 8404724 ~ 8411934 (-)
G436182 NA non-coding downstream 131480 8399564 ~ 8401948 (-)
G436337 NA non-coding upstream 267450 8826604 ~ 8827451 (-)
CI01000306_08864809_08865809 BRK1, BRK1.S, BRK1.L non-coding upstream 304913 8864794 ~ 8866213 (-)
G436383 NA non-coding upstream 362460 8921614 ~ 8921940 (-)
G436386 NA non-coding upstream 364416 8923570 ~ 8923780 (-)
G434338 NA other downstream 1666492 6866656 ~ 6866936 (-)
G434086 NA other downstream 2081177 6437406 ~ 6452251 (-)
G434016 NA other downstream 2171785 6355180 ~ 6361643 (-)
G433985 NA other downstream 2336218 6196107 ~ 6197210 (-)
G433670 NA other downstream 2492145 6041014 ~ 6041283 (-)
G436446 NA other upstream 1097125 9656279 ~ 9671776 (-)
G436626 NA other upstream 1275871 9835025 ~ 9836323 (-)
G436643 NA other upstream 1462994 10022148 ~ 10025375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004256 sema3fb coding NC_007122.7 CM002895.2 35447417 ~ 35575830 (-)