G435631


Basic Information

Item Value
gene id G435631
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9860213 ~ 9860582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500058
CCACCCTGCCAGGTTCAGTCGCGCGGACTAATGTTTTAGATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT
>TU500060
TATCTGCCTTAAATAGTATTGAAAATTACTAATGTCACATATTATTTAGGATGGATAGTATGCACATTGGGACGTAGCCAGAGCCTTTTAAGTGAATCAGTTTGATGAATCAGTCACAGTTCCAGACATTAATTAACTGTGCATTCATGCATGTGTGGTGTAGGCGGAGAATCTTGTCAAATCTTTCCCGATGAATCCAGTCTGAATAGGCGGGATTTAGAGCATTAAGTAGATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT
>TU500061
CCACCCTGCCAGGTTCAGTCGCGCGGACTAATGTTTGTGAGTTTGTAGGCTATTTCGTCTGTCTTTCTTTGCTACTATTACAACCACTTTCTGGATCCTTATGTAGATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT
>TU500062
CCACCCTGCCAGGTTCAGTCGCGCGGACTAATGTTTATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500058 False 36 TUCP 0.50 1 9860480 9860515
TU500060 False 229 TUCP 0.46 1 9860213 9860441
TU500061 False 103 TUCP 0.49 1 9860480 9860582
TU500062 True 36 TUCP 0.50 1 9860480 9860515

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location