CI01000321_04120043_04140867 (CLCN1A)


Basic Information

Item Value
gene id CI01000321_04120043_04140867
gene name CLCN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4120043 ~ 4141293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_04120043_04140867.mRNA
ATGACAGTGTTGTCTGATAATAGGTTTCCAACATTTCCTTGGGAGTCCTTGATGAACAAATTGGAAGAAAGAAAGATCCACATAGAGCTATATGGAGAGTACAGAGAGCACCCTGGTGGGTCCCAGCGGAGAGAAGCCACTCGCCTTCTGATGGAGAGACAGCGAAAAAAGCATGGATATCACCACCATGGACATCACTACCATGGGCACCACCATCACAGCCACCATGGGCGGAGTCACAGCCGAAGTCGCCGTCACAGCCACCATCACCTGGAGATGGGGAGCATTCAAGACAGACAGGAGGAGGAACAGGGCCACACCTCCTCGTTCAAGAAACGACGCTCCTACTCCAAGTGCAGAGACTGTGTGGCACGAGTACAGAAGTTCCTCATCTCTAAATTGGGAGAAGACTGGATCTTTCTGGTGTTGCTGGGTATTACCATGGCATTGGTTAGCTGGAGCATGGATTATGCTAGTGCCAAGAGTCTACAAGCCTATAAGTGGTTTTATGGGGAGTTGAGGGGAAACATCCCACTGCAGTACCTGGTCTGGGTTTTCTATCCCATGGTGCTCATCTTGTTTGCCTCCCTCTTCTGCCACCTGGTCGCTCCTCAGGCCATTGGCTCTGGTATTCCAGAGCTGAAAACCATACTCAGAGGTGTTGTGCTGAAGGAGTATTTGACACTCAAGGCATTTATTGCGAAGGTGGTGGGACTCACTGCTGGCCTGGGCAGTGGTATGCCAGTTGGCAAAGAGGGTCCCTTTGTTCACATAGCCAGTATCTGTGCAGCTGTGCTCAGCAAGTTTATGTCTTTCTTCTCTGGAGTCTATCAGAGCCCATATTGTTATACAGACATCCTCACGGTGGGCTGTGCTGTAGGGGTTGGATGCTGTTTTGGAACCCCTCTTGGAGGTGTTTTGTTCAGCATTGAAGTTACATCAACCTATTTTGCTGTGAGAAACTACTGGAGGGGCTACTTTGCTGCCACATTCAGTGCTTTTATTTTCAGAGTACTGTCTGTGTTCAATAAGGATGCAGTAACCATCACTGCTCTCTTCCGCACCAACTTCCGCATGGATTTTCCTTTCGACCTGCAAGAGCTTCCAGCGTTCGCCATTATTGGGATTTCTTGTGGGTTTCTAGGAGCTTTCTTTGTTTACCTGAACCGTCAAGTTGTCCTGTTCATGAGAAGACCTAACATTTTCACACGATTCCTTACAAAACACCGGCTGATTTTCCCTGCTGTTGTGACATTAGTGGTTACGACACTGACATTCCCTCCAGGCTTTGGGCAGTTCATGGCTGGAGAGCTGATGCCCAGGGAGTGCATTAACTCTCTGTTTGATAACTTCACCTGGACTAAAATATGGGGTTCTCCTCTCCCACCTGGTCTCGGTCGCTCTGCTGTGTGGTTTCACCCTGACGTCAGCATCTTTGTCATTCTTATTCTCTTCTTTATCATGAAGTTCTGGATGTCTGCAGTTTCCACCACAATGCCCATCCCGTCTGGAGCTTTCATGCCTGTCTTTGTATTGGGTGCCGCATTTGGTCGTTTAGTGGGTGAGATCATGGCAACTCTCTTTCCTCATGGTATCCTGTTTGATGATATACTATACCGCATCATCCCTGGAGGGTACGCTGTCATTGCACTCCATCATTCTGTCCTGTTACTCTATTGGTCTATTCTTTTCTCTTACCATGAAGGTGCGGCGGCGCTAACGGGAGCTGTCACTCACACCGTTTCCACAGCAGTGATCTGCTTTGAGCTGACTGGTCAGATCTCTCACATCCTTCCCATGATGGTCGCCGTCATACTGGCCAACATGGTAGCGCAAGGTCTGCAACCGTCACTGTACGACTCCATAATCCAGGTCAAGAAGCTGCCCTATCTCCCCGAACTGGGCTTTGGCCACATAAGCCAGTATAATATCTTTGTGGAGGACATCATGGTGAGGAAAGTGAAGTTTTTATGTTCCCACTCTACATACAGAGAAGTACTGCATTTGTTGGACTCGACTTCTCTAAAAACCTTCCCACTGGTTGACTCAAAAGAATCTATGATTCTGTTGGGCAGCATTGAGAGGTCTGAGCTTCTCGCCCTCTGTGATTGGTGGCTGTCAGCAGAGAGGCGGATCCTAATGCAAGGACAAAGCTTGCAAGGTCAGGTGCCTTCTGCTAAAATCAGCTGGGAATCCTTTGCCTTTGTTGATGAGGAAGAAGAGGAGAATGAAGATGATAAGACGATACCAGTTCAAGAGGAAAGAAACGGTCCTGTGCCTCTACCCAAACCTTCTGAACCATCCACCAATCACACGTCTCCCGATAAGGGTCCTTCCCAGTCTTTCGGGAGAATTTTACGTAACTTCTTTTCATCCTCTTCAGAAAGACACACAGAAGGTCAGCCACAGATCAAAGCCTGGGAGGAAACAGAGATGGATAAACCTCTGGATATCGATCAGATCAGAATAGATCCCTCCCCGTTCCAGCTGGTGGAGAGAACGTCACTACATAAGACTCATACCCTGTTCTCTTTACTGGGCCTCAGTCATGCCTATGTAACCAATACTGGAAAACTGGTGGGAGTTGTGGCACTGAAAGAGCTCCAAAAAGCCATCGAGGGCTCAACACGCAGTGGCGTGCGCTTGCGCCCCCCTCTGGCCAGTTTTCGTGACACCATTCGCAAAGCTGCGAAGCCTCCTCAGGCCTCTTCCCCTCCATCCTCGCCCGGCTCAACCACAGCTCCTTCCTCGCCTCTGTCCGCACCCGTGGTCCCTCAGGTCCATTCCCCCAGCCCGGCGGCCCCAGAGAAGGAAGGGAAGGAGGAGATGGAGGTGTGGATTGAGGGCGTGAAACGGGAGCCCGTCCCCGAAAACAAAGAGGGTGAAGAAAACGAGGATGAGGAGCCCCTTTAGGACAAGTAAAATCTCTTTTTCTTTTATTTGAGGTGTGATCAGTGTACTTTTTGTTCACTTTTATTTTTATATAACAATTTCATGTTTTTTATTAATTGCTCATTTAAAAGGTTTTAAAACGTCTTTTCTTTTCTTTTCTTTGTTTTCCTCCTCTCTCTTTCATTTCCTCTTCTCCTTTCTTTTCTTTATTCTCTTTTTGTAAATCATAGAAGAAAAATAATAAGAGAAAAAGAGTTCTCCTCTTATTTTTCTTCTTCTTCCTCCTAAAAAATTCTACACATTTTCTTCTCCTCTTTTTCTGCTTTTTCCACTTGATCTTTCTGTTCTTCCGCTGGAAATTTCTGTACTTTTTATGCCTTTTTCTTCCTCTTTTTTTCTACTTACACCTCCCCTGTTTATTTCTATTTCCTCTAAACATTTCTGTAA

Function

symbol description
clcn1a Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_04120043_04140867.mRNA True 3339 mRNA 0.47 23 4120043 4141293

Neighbor

gene id symbol gene type direction distance location
CI01000321_04082880_04096700 SLC2A3A coding upstream 22746 4082880 ~ 4097297 (+)
CI01000321_04063726_04074390 NA coding upstream 45550 4062691 ~ 4074493 (+)
CI01000321_04022562_04030274 CACNG8A coding upstream 89707 4022562 ~ 4030336 (+)
CI01000321_04013470_04014515 CACNG8 coding upstream 104631 4013468 ~ 4015412 (+)
CI01000321_03989853_03999565 CACNG7 coding upstream 119007 3989729 ~ 4001036 (+)
CI01000321_04188431_04194328 ING4 coding downstream 47138 4188431 ~ 4194385 (+)
CI01000321_04204706_04214819 IFFO1A coding downstream 62783 4204076 ~ 4214861 (+)
CI01000321_04223582_04224440 NA coding downstream 82289 4223582 ~ 4225511 (+)
CI01000321_04274723_04276159 NA coding downstream 132552 4273845 ~ 4276225 (+)
CI01000321_04299710_04300495 NA coding downstream 157565 4298858 ~ 4300521 (+)
G459126 NA non-coding upstream 17704 4099021 ~ 4102339 (+)
G457878 NA non-coding upstream 281511 3838307 ~ 3838532 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding upstream 314532 3792915 ~ 3805511 (+)
G457874 NA non-coding upstream 381450 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 387933 3722749 ~ 3732110 (+)
G459178 NA non-coding downstream 95211 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 107313 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 107776 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 108938 4250231 ~ 4250465 (+)
G459183 NA non-coding downstream 109374 4250667 ~ 4250959 (+)
CI01000321_00815160_00819665 NA other upstream 3297196 815160 ~ 819749 (+)
G456774 NA other upstream 3693018 426083 ~ 427025 (+)
G459303 NA other downstream 344104 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 374241 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 606119 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location