CI01000323_00058863_00066027 (WNT3A, WNT3A.L)


Basic Information

Item Value
gene id CI01000323_00058863_00066027
gene name WNT3A, WNT3A.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000323
NCBI id null
chromosome length 493539
location 58414 ~ 66027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000323_00058863_00066027.mRNA
GTCTTTGGCGGTGGGACACCAGTACACTTCTCTGGGTACCCAGCCCATCCTGTGCAGCTCAATTCCTGGTCTGGTGCCCAAACAGCTCCGCTTCTGCCGCAACTATGTGGAAATCATGCCTAGTATGGCAGAAGGGGTGAAAATTGGCATCCAAGAGTGTCAGCATCAGTTCCGTGGCCGCAGATGGAATTGCACTACTATCAATGATAACCTGGCCATCTTCGGACCAGTGCTGGATAAAGTGTTAATAGCCACTCCATATCCCCTGCAGTTTCCCCTCCTCCGGTCTAAATTAAAGGGGAGATTGGTCAGGGACAGGGGTGATGGAGGTTTAAACCAGTGGCAGCACAATGGGGGATTCAGGAACCCAGCAGCCACCAGAGAATCAGCATTTGTCCATGCAATTGCCTCAGCGGGGGTAGCATTTGCTGTGACACGGGCTTGCTCCGAGGGCTCTGCCACCATCTGCGGCTGTGACACACGGAGGAAAGGACCGCCAGGCGAGGGCTGGAAGTGGGGTGGCTGCAGTGAGGATGTGGAGTTCGGCAGCATGGTATCACGAGAGTTTGCTGATGCTCGTGAGAATCGGCCAGACGCTCGCTCTGCTATGAATCGTCACAACAACGAAGCTGGACGTGTGTCAATCACTGACCACATGTATCTAAAATGCAAATGTCATGGACTTTCGGGCAGCTGTGAGGTGAAAACTTGCTGGTGGTCGCAGCCTGACTTTCGGGTGATAGGCGACTACATGAAGGATAAGTATGACAGCGCATCAGAAATGGTGGTGGAGAAACACCGGGAATCACGAGGCTGGGTCGAGACCTTACGGCCAAAATACACCTTCTTCAAGCCCCCTACTGAAACTGACCTTGTCTACTATGAAAGCTCACCTAACTTCTGTGAACCCAACCCAGAAACTGGTTCCTTTGGCACCCGTGACCGTATGTGTAACATGACATCACACGGTATCGATGGCTGTGACTTGCTTTGTTGTGGCCGAGGCCACAATACTCGAACTGAGAAACGCAAGGAGAAATGTCACTGCATTTTCCACTGGTGCTGCTACGTAAGTTGCCAGGAGTGTACACGAGTTTATGATGTCCACACCTGCAAGTGAGCACCTGCACCAAACTAAAACCAGATTAGACCAGATTATACATTTGGGGTTGTGAACACGCAAGAGCCTTTTGCTGAAACTTGTGGACCAAGTTGAAATGGTTTCACTAATAAGACATCACAAAAAGATACAGTGGACAGTAAAGTAATTCTAAAAGACCTTCAATAAGAATGCTGTTTAAACAGACAAAAAGATAAACCCCTAAAGGCTTTGTTTCCCACCTGGACCATTGTTAAGGACAAACACAGGCCTGTGGCTCAGCTTTAGAAGGGACTAATCATTTCCAGTTTGATATGGGAGGGGATAAGTGATGGATCTGACTACTAGAGACTCAGGCCCTGGGACCTTCACCAATTGTATCTCCAAGAAAAGAACAGAAAATCTTTGAAAGGGGAGGATTTGTCCACACGTGGCAGCAAACACAGATGGGAGAACTCTGTGACAATAAA

Function

symbol description
wnt3a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including chordate embryonic development; post-anal tail morphogenesis; and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; hindbrain neural rod; neural keel; neural tube; and paraxial mesoderm. Orthologous to human WNT3A (Wnt family member 3A).

GO:

id name namespace
GO:0035108 limb morphogenesis biological_process

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000323_00058863_00066027.mRNA True 1569 mRNA 0.49 5 58414 66027

Neighbor

gene id symbol gene type direction distance location
CI01000323_00008871_00010120 NA coding downstream 48294 8688 ~ 10120 (-)
CI01000323_00121706_00125427 NA coding upstream 54847 120874 ~ 125427 (-)
CI01000323_00328972_00333383 NA coding upstream 262940 328967 ~ 333547 (-)
CI01000323_00404644_00405142 NA coding upstream 338098 404125 ~ 405142 (-)
CI01000323_00488566_00489842 NA coding upstream 421409 487436 ~ 489842 (-)
G460069 NA non-coding downstream 17094 41030 ~ 41320 (-)
G460059 NA non-coding downstream 21133 32893 ~ 37281 (-)
G460058 NA non-coding downstream 22317 35730 ~ 36097 (-)
G460042 NA non-coding downstream 30401 17489 ~ 28013 (-)
G460028 NA non-coding downstream 46536 11563 ~ 11878 (-)
G460191 NA non-coding upstream 16860 82887 ~ 83161 (-)
G460200 NA non-coding upstream 29351 95378 ~ 169057 (-)
G460434 NA non-coding upstream 373484 439511 ~ 445902 (-)
G460457 NA non-coding upstream 408844 474871 ~ 475376 (-)
G460455 NA non-coding upstream 409433 475460 ~ 476111 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016089 wnt3a coding NC_007113.7 CM002886.2 3106237 ~ 3158919 (-)