G460434


Basic Information

Item Value
gene id G460434
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000323
NCBI id null
chromosome length 493539
location 439511 ~ 445902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU528575
GCTACAACTACCTTACTATCTATTAATAAGCAGTAAATTAAGAGTTTATTGAGGCAAAAGTTAATAGTGAATATGTGTTCCCTATACCAAAGTGTTACCCCACAAAATATTTTACCTATCACCATGCGTGTTATTTTCTTTTGCAAAATTATTTTTATTACAGTTTGTAAGGTTCTGACATCCAAGCGTAAGTAACACTGAGCAATATAAAATGAAGTAAGCCTAAAACAAATTCTGTTAAGAAATTATTGTATGTATATTCTGTATATTCTACTTTCTCTTATCTGCATTTCACCTCTGCTTGTTTCCTTTTAATAAACCTTACATTATATAGGCTCTGTGATAAACTGTTTGTTATGTTCCTAGATTCTTCCATGCTGATGGCCAGCACCCATGTCAAAGAAAATCTCAGGCTAAAAACCATGACTAAAAACGCCACTCACATGGAATGATAGCGCCATACAGTACGAGATTATGAGAAACTTCATCTTTTCAGACTTCATCGTTTAAAAAAACGCTGTTGGAGCTCACATGGAATGATAGCGCCATTTTGATCGTCAGTCAAACGTGCAGCACGAGATCATGACAAACTTCATCTTTTAAAACTTCATCGTTTAAAATAGGTAATGAGTTCAAACGCATTACCAGTGTGGACCTCCTCGATACATTCAGATCATAGTTACAGAGCAAGACAGGGGGGCTTTTGGAAAAGAGGTTGAAGATCTTCTTAACAAGCCTGATCAACAGACCTCAAATATTGTGAATCACAGAAAGCAAGCAGTTCTGGAAGGTCTCCCTTTGTTTCTCCATGAAGATCCTTCTGCATTGTTCAGAAAATGTCTGCACATCACTGACAGGCTTTCCTGTGTAACACTGAAGTTTTCCTCCATCATATTTATCCAAATGAGGTTCTCTGGGATCCCCAGTTGAAGGCATCAGAACATCAGATGTTGGCCTGGACAGATATACCAACAGTACACCATACTGACCTCTGCTTTTGCTTGGATGGCTGATTACCACCATGTTCTGTGAGAGTATTATAGCAAAACTGAGCACCTGTGACAGTGGGATTTGTAGTTGTAAAAAATAGTCACGAGTAAATTTAAAGTCACAGAGAAAGAGGTTTTTTAGAAGTTGCAAACTTTTTTCTCTCTTTTTCTCTCACAAACAACACAACAGTTATACCTTTTCTGGTGGTACACAAATCCTATTCTACAAATCTCAAATTAAGAAATTCATATGCTCACATTTAAGGCGCA
>TU528578
TAGAGTTTTAGCCGGCAACAGCGAATGGCACGGTGGATTGTGTTCACGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCGAAGATCACAGGCATCCAGTATGGTTTTCCGGCCTTGACCCTTATCGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATGCACTGTAGATGATGATAACTTCAAACTCTTTGCAGTTTTTCTCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTTGCCGCAGCATTGGGGGAATTGGTGATCCTCTGCCCATCTTGACTTCTGAGAGACACTGCCACTCTGAGAGGATCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGAAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTTCCGGCCTCTTATTGCTACCTGTCCCAACTTTTGGAATATGTAGCTCTCATGAAATCCAAAATGAGCCAACATTTGGCATGACATTTCAAAATGTCTCACTTTCAACATTTGATATGTTATCTATATTCTATTGTGAATAAAATATAAGTTTATGAGATTTGTAAATTATTGCATTCCTTTTTTATTCACAATTTGTCCCAACTTTTTTGGAATCGGGTTTGTAGAACAAAACATCTTTGTCCATAAAACTCACAGAAAAAAGTTCACATAACATCATTTTTTGAGACACATTGGAAAAGAATTACAAGTCTTTTTAACTAACAAAACTGTTTTAACTGAACAAAAATAGACCTGTGACTTTACTCAGTGATTTGGGTTGAGTGAACAACTTGGTCCAAAGTTGAGTAAACTCAAAAAAGCTGTGCAGCAAGTTGTCTTGAAATTTTAAGCTGTCAACTTTTTATTTTTTACAGTGCACGAAGATGGTGAGTTTCCCAATAGCTGCCACTGTCCCAAATCAAGAGACTGAACACAACAGACTTCAATCTGTATTAACCTATTTTGATAGGTTTAATGTTACATTATTAGCTCGGAAAATACGCTAATTCGACTAGAAACATTGTAGACCGGAAAGGTAAAGCATACTTCCAGTTATGAGTCGGGCGTGACTTGCACTTAAGAAAAATGTGGATATACTACTACAGCTAATAATAATAATATTAAGTTAATATTATTAAGCAAAGTTATTAACAATATCTTTTAAAAACATAATTTATTATAAAATGACCCACTATGAAAATACAGTTTTACTGTGTTATGTGTCCTTTCTTTTTCATTACAGCACATCACTGACAGGCTTTCCTGTGTAACACTGAAGTTTTCCTCCATCATATTTATCCAAATGAGGTTCTCTGGGATCCCCAGTTGAAGGCATCAGAACATCAGATGTTGGCCTGGACAGATATACCAACAGTACACCATACTGACCTCTGCTTTTGCTTGGATGGCTGATTACCACCATGTTCTGTGAGAGTATTATAGCAAAACTGAGCACCTGTGACAGTGGGATTTGTAGTTGTAAAAAATAGTCACGAGTAAATTTAAAGTCACAGAGAAAGAGGTTTTTTAGAAGTTGCAAACTTTTTTCTCTCTTTTTCTCTCACAAACAACACAACAGTTATACCTTTTCTGGTGGTACACAAATCCTATTCTACAAATCTCAAATTAAGAAATTCATATGCTCACATTTAAGGCGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU528575 False 1259 lncRNA 0.37 7 439511 445902
TU528578 True 1726 lncRNA 0.36 2 439511 441524

Neighbor

gene id symbol gene type direction distance location
CI01000323_00404644_00405142 NA coding downstream 34369 404125 ~ 405142 (-)
CI01000323_00328972_00333383 NA coding downstream 105964 328967 ~ 333547 (-)
CI01000323_00121706_00125427 NA coding downstream 314084 120874 ~ 125427 (-)
CI01000323_00058863_00066027 WNT3A, WNT3A.L coding downstream 373484 58414 ~ 66027 (-)
CI01000323_00008871_00010120 NA coding downstream 429391 8688 ~ 10120 (-)
CI01000323_00488566_00489842 NA coding upstream 41534 487436 ~ 489842 (-)
G460200 NA non-coding downstream 270454 95378 ~ 169057 (-)
G460191 NA non-coding downstream 356350 82887 ~ 83161 (-)
G460069 NA non-coding downstream 398191 41030 ~ 41320 (-)
G460059 NA non-coding downstream 402230 32893 ~ 37281 (-)
G460058 NA non-coding downstream 403414 35730 ~ 36097 (-)
G460457 NA non-coding upstream 28969 474871 ~ 475376 (-)
G460455 NA non-coding upstream 29558 475460 ~ 476111 (-)
G460459 NA non-coding upstream 31953 477855 ~ 478215 (-)
G460460 NA non-coding upstream 33215 479117 ~ 479357 (-)

Expression


Co-expression Network