Gene
RNA
| Item | Value |
|---|---|
| gene id | G460460 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000323 |
| NCBI id | null |
| chromosome length | 493539 |
| location | 479117 ~ 479357 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU528616 | True | 241 | lncRNA | 0.37 | 1 | 479117 | 479357 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000323_00404644_00405142 | NA | coding | downstream | 73975 | 404125 ~ 405142 (-) |
| CI01000323_00328972_00333383 | NA | coding | downstream | 145570 | 328967 ~ 333547 (-) |
| CI01000323_00121706_00125427 | NA | coding | downstream | 353690 | 120874 ~ 125427 (-) |
| CI01000323_00058863_00066027 | WNT3A, WNT3A.L | coding | downstream | 413090 | 58414 ~ 66027 (-) |
| CI01000323_00008871_00010120 | NA | coding | downstream | 468997 | 8688 ~ 10120 (-) |
| CI01000323_00488566_00489842 | NA | coding | upstream | 8079 | 487436 ~ 489842 (-) |
| G460459 | NA | non-coding | downstream | 902 | 477855 ~ 478215 (-) |
| G460455 | NA | non-coding | downstream | 3006 | 475460 ~ 476111 (-) |
| G460457 | NA | non-coding | downstream | 3741 | 474871 ~ 475376 (-) |
| G460434 | NA | non-coding | downstream | 33215 | 439511 ~ 445902 (-) |
| G460200 | NA | non-coding | downstream | 310060 | 95378 ~ 169057 (-) |
