CI01000325_00974944_00977537


Basic Information

Item Value
gene id CI01000325_00974944_00977537
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 972196 ~ 978022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_00974944_00977537.mRNA
CTATAAAAAAACCCTCCAAAAACATTTCAGCATTTAATTTTCACAACGAAAAATAATGAAAGAGATTCATTCATTTTCTCGAAGTGCTTCAGCTAGGACTAAATGAGAAATAAATCAGTGCTTTCATCATTGCGTGCACAGCAGAGCAGAAGTTCATTACAGGCTGTGTTGGTCTGCTGAGTTACAGATATTATCCTTCCTCCATGGAGCACAAATGTCAATCAGCATGAATGAACAGCAAATTACTGCTGTGGAGAGGGCAAAGATGCTCTTGATGATACTTGTTTAAATTGTTCTTTACTAAAAGAGCTTGATAAACATTTATAGTGTCATTGATATTTTTTTTTTTAAATGTAAAAAAAAAAAAAATGCAAACAGATTGGATAGGATATGTAACCAGTGACCTTGTTAAAGTTTCATTTGCAGAACTTGATTTGACCAAGTGCATCATGTTACTGGATCAACATCTTTGTTGATCCTGGTACATTCCAGTCAACCAATTAGATTTGAGCGAAGTTTACAGTTTATGTTAAGTTTAGGCTTACAACCAGGGTTAGGTGCTTCTACACCTGTGTTATTCACCTATCATTTTTCTCTGATTTTAGAAATAACTTATAGGTATGGTTAAGTTTAAGGGTAGGGTTATGGTTAGGATTACATTTTCAGACATGAATGTTGTTCCAGGATCAACAAAATATGTTGACCCAGGAGCGTGTCTAACTGCAAAATCAGGATGTGTCCTTAATGCAACCCCACAGATCAAGCCTTTAAAAAAGATGACTGCAGATTGCTCAGATATATATATATGAGATGTATGAAATTTTCATGCTGCTCAAGCGAGCTGAACTTTGCTCTACCGCAGAACCCAAAATGCTCACTCTGTGAAAAAGAGCTGCTGTCTACCCTTGAAGACAGATATCGCATTTCACATGTTTCCAGATGTTGAGAGGAGTGTTGGGACGCCCTGGAGTAGACAGGACACTGAAAGAAATTGTGTGAGTGTTCAGTTCAGTCACATCTGGAGACATGAGGGATGAGATGATGAGTCCTCTCTGCATCAGAGAACAGGAGCTATAACAACTTCACTGCAAAATTCGGTTTCTTATCCAGCATTTTTTACTTGATTTGCTGCAAAAATAACTAAACATCCTTAATATAAGGTTTAATTAAGATGCAAAATTGTGTAAGATAATAAGAATTGTTTTCAGAGAATATAGCCCATTATATATTTTTTTAGTAAAAAAAAAAAATGTTATGTTTTAAACATGAAATATAAACTTAATTTAATAGCCTATGTGTTCTTTTTACATTTAAATAGCTGCAGTCTTGCCTCTCCAAAATAACAGTCAACATTTTATTTATTTTATTTAACCATTTTAGTTTATAAAATCATTTAAAAGACTTTTTGGTGACATAGTGGTGGCCACTGTCCACTATGCATTGTAGAATCTATGAAAAGGAAAGAATGCCAGGATTAACAAGAGCCTGTGTGATTGTATTATCTAAAATGGGACTCACACTTTTTCTTTGAAAGAGTGAAGAATGAGAGAGCGAGAGAGGTAGAGAGCACTCATCCTTGTACATGCAAGACTAAACAAACAGCCTCCCTTTCTCAGAGGGTCATGTGCTACACCTCAGGGTCCTCACATAAATGAATGTGCTCAATACACATACCAGCAGGAAGCCCCACACCACATGCTCCGGAAAAGCCTGTAAAAGTGACTGCTTCATTTAGCTTTCACAGTACAGTTGGCAGACAGTATAATTTTGTAAATAAAGCAAATTCTTTCATCCCCTGACCTCTCATTTTCTGTCATGTTTTAACATAATTTACAGGAAATTATTGGAAGATATGTGTATTTTTACTTTTAATCAGTTTGGTATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATTAGTAAGACGCGCGCCAGTTCTCTTTCGCGCTTGAACAAACAATAATACACAGAATTATGCCAAAATGCCCGTTTTGTCGGGTATCCTCATAAGAGCAGTCTTAAATGAGTTAAATAACGTCTTAAATTAACTTAAAGAGTTGTGAGAAAATGAAATGCGATTCAGATCTGCGTCATGTTCGGCAGCAGCAAGTCTTAAAGTGACAGCAGCCTAATAAATCAGTTGCTGTGATGTCATGTTAATCAAAGAACAAAGGTAACAGAGAAAATTGTCGCTTTAATAAGGATTTATCTATATTTGATTTATAATTCATGCAGTGAAGACTGTAAAGTGTTTGGTAACTTTATTCAATTTCTGTATATTTCCTACCTGTTAGACAGGTAAAAAGATGCCATTAAACAAATATTTAAAATATACTGTCTTTAAGTTGTTTCTACATTAATTTGGAAAGTAACTGTGAAATTATTACAATGTAAAAATATTAAAAACTTCAATGTATCACAATTAATCTTAATATTTTTTTAATCGATTGACAGCACTAATTATATTATATTATATTATATTATATTATATTATATTATAGATTTTTAGTCTGTTCAGATTTTTAGCCTGTTCTCAAAGCAAATCATTACTCAAGCTTCTGTTTATTTCTTCACAGATGAGGTCAGAGCTTTGCAACAGTGGTGATTGTGTGGAAAAGCTCTGTCCAGCTTTGAGAGGCTCAAGAGGGACCTCACATTTCTCATCGCTTGAGTTCTCATCCATCACTCCGTCAAGTCCCAGGTCATAGAGGTTATTCCCTCTTCTGGGTCATGATGAGGCTACACTCAACACTGGGCACTTGGCTCTTCACACTCCTAGTGATGCCAGTCTACTGCCAGAGTGGTGATGATGGAGAGTGGGGATCAGGTGACGTCTCCGGGCCTGTGGTCACTGGCAACTCCTCTGCTTCAGTTTTCCATGCAGCCGGGGATGAGCCAGACAGAACCAGCCCACTTTTTCAAACCCTGCCAGATATGGAAGGTGGCGACTGTTATGTTAACTTCCACACCAGCCAAGTCATGTCAAGGCGGTTACGAGCTTTCAGAGAGGAAGTTACTTATTTAAAGGCTCTTCAACATGGGAACCAGGCAGTGATGGAGAATCTGATCCAGTTTGTAGGAGCAGAAATGGGAGATCAACGCTATGAGGAGGTGATCCAAGAGAACATTGTTGGAATCAGGGAGGAACATGTGAGCTGTGAGAGTGTGGTGACAAAAGCAACAGAGGAGATGGAGAATCAGCTGCAGGGAGACACACAAGACACTTCGGCTGGAATTCAGAAGATAAAAGAGGAGTCCCTTGCCTTTGAAGAAATGCTGCGTACCGCGTCAGCCATCGCCACTCGACTGGAGAGTTCCTCAAGAGCCCTGCACGTGGAGATGATCGAACAGCTGAGGAAGAACACGAGACAGCCGCGCTAAACTAAATGACCCAGTGGGAAGCCGTCCAACCTGGAAAAATAGCTAAAGTGTCACTTCTATATTTATCCACAATATTTTAATAACAGTGATACCATGTCATCACTTTAAACAGTCTATATGTGTTATCTCCTGTCCTTACACAGTTTTTTATGAAATGGCATTATTGTCAGAGGACTGAAACTATATTTTTCCTCTCTTGTCCGATGTTCATTTGTGAGCCATAATGAAAACATAATGGCTTTGTGTACAAGGAAATTGAAAAAATGATCTTGGCAGTGAGGTGACATCTTAAAAGAATATTTTCTTTTCAAGTACAGACAACCCTGCAGCTATGGTCTGGCTGTCTTGGCGCTAGGGAGCAGATGGTGAAAAGACTGTATGAGGGTCTGGAAAACAACAAGCATGAACTCATATACATTGGAAAGAGAAAGCAAGGCGGAGAAAGAAAAAGGGGAAAAAAGATATGGCAATGATGTCACAGAGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_00974944_00977537.mRNA True 3881 mRNA 0.38 2 972196 978022

Neighbor

gene id symbol gene type direction distance location
CI01000325_00847888_00849234 NA coding upstream 122752 847664 ~ 849444 (+)
CI01000325_00825806_00831039 NUP43 coding upstream 141086 825806 ~ 831110 (+)
CI01000325_00795214_00806009 LRP11 coding upstream 166102 795214 ~ 806094 (+)
CI01000325_00719124_00749486 ANKRD6 coding upstream 221760 718219 ~ 750436 (+)
CI01000325_00707344_00713775 NA coding upstream 258313 706377 ~ 713883 (+)
CI01000325_00986217_00993874 CHRNA2B, CHRNA2 coding downstream 8195 986217 ~ 994193 (+)
CI01000325_01041593_01061870 NA coding downstream 63500 1041522 ~ 1061929 (+)
CI01000325_01175992_01194875 RHOJ coding downstream 197970 1175992 ~ 1195671 (+)
CI01000325_01342491_01349333 SIX4B coding downstream 364105 1342127 ~ 1349604 (+)
CI01000325_01355950_01357775 MGC130961, SIX1A, SIX1B, SIX1.L, SIX1 coding downstream 376180 1354202 ~ 1357862 (+)
G462078 NA non-coding upstream 17323 954365 ~ 954873 (+)
G462073 NA non-coding upstream 28162 943824 ~ 944034 (+)
G462071 NA non-coding upstream 29272 942521 ~ 942924 (+)
G462067 NA non-coding upstream 36787 935169 ~ 935409 (+)
G462059 NA non-coding upstream 55475 916452 ~ 916721 (+)
G462108 NA non-coding downstream 53388 1031410 ~ 1087149 (+)
G462177 NA non-coding downstream 221423 1199445 ~ 1199676 (+)
G462178 NA non-coding downstream 227608 1205630 ~ 1206757 (+)
G462167 NA non-coding downstream 253464 1231486 ~ 1231897 (+)
G462202 NA non-coding downstream 274013 1252035 ~ 1252355 (+)
G462730 NA other downstream 639574 1617596 ~ 1620194 (+)
G462778 NA other downstream 850060 1828082 ~ 1896815 (+)
G462928 NA other downstream 1022455 2000477 ~ 2000884 (+)
G463566 NA other downstream 1585133 2563155 ~ 2563735 (+)
G463724 NA other downstream 1750184 2728206 ~ 2728450 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017261 NA non-coding NC_007131.7 CM002904.2 19779299 ~ 19788922 (+)