CI01000325_03657039_03691049 (BACH2B, BACH2)


Basic Information

Item Value
gene id CI01000325_03657039_03691049
gene name BACH2B, BACH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 3656973 ~ 3691049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_03657039_03691049.mRNA
GTGGCAACTTTGAGGAGGAGGTCATGGGTGTGAGCGGTATGTCCGTGGATGAGAAGTCTGAAGCTCCCATGTACGTGTATGAGTCGACGGTGCACTGTACCAACATCCTGCTGGGTCTGAATGAGCAGCGGAAGCAGGGCCTGCTCTGTGATGTGACCGTGCTGGTGGAGGGGAAGGAGTTCCGCGCGCACAGGGCTGTCCTAGCGGCCTGCAGCGAGTACTTCCTACAGGGGTTCGTCACCCAAAGTGACAATGAACTGGTTCTCAGCATGCCAGAGGAGGTCAGTGCCCAGGGATTCGCTCCATTGTTACAGTTTGCCTATACGGCTAAGCTGCTGCTCAGCAGAGAAAACATCCAGGAGGTCATCCGCTGTGCCGAATTCCTGCGCATGCACAACCTGGAGGACTCCTGCTTTCGCTTCCTGGAAGCCCAACTGCGCAGCGAGGAGGACGGCCTGCTCCTGTGTCGCAAGATGGCGCCTGAGAGCAATCACTCAGAGGATGAAAGCATGCAACCTGAGTTGCTGACGACAACGACAACTGCAGTGACCCTGTCCGGTTCTCCACGCTCTCGCCGTTGCGCAGAGACCGTGAACTCCTTGCGGCGACCGGACCATGAGCGGCTGGCGGCAACAGAAGATTTCGCTGATGGGCGGATGGACTTTGAGCGACACGGCACCTCAGACCTGCCACGATGCCCTAAGTACAGGAAGTACCAGTGGGCATGCAACAAGCACAATAACGACGCCTCTTCACACACCAGTACCTCAGGTTTTCCAAGCACATTCAAGGAGATGAGCAGGCCAGCAGTGATGCAAATCAAGCAGGAGCCACGCAGCGAGGAAGAGTCCATCTCGCTTTGCCTGTCAGGGGACGAGCAGGACGGAGGTGAAAAGGACGGTGTGGCTGAGATGGAGCTGGATGGTTCCATTGCAGTGGACCAACCAAAAGGCAGCAGCAAGTCACCCACCTGCCTAAGAACTCTCTTCAAGAAGGACCTGCCTAGCACACCCCAACAGCTTTTCGCTAACAGACTCGTCAATGCCCAGGATAAAGGAACCACTCAGGGAGACCACAAAAAAGACTACAGGCCTTCGCTTGGCAATGAGCTTGGCATGCCTGTGGCGTTCCCCAAAGACACTGATGGTTTCCCACCTGGGCTTTCGTTGAAGTCGGCTTCATGCGATGGTGTGTGTAAGCAAGAGGGGGAGCTGGATCGCCGCAGTGTCATTTTCTCCTCAGGGGCCTGTGACCGACTGGGTACGCCCACCCACTCCCATCCCAGTGGGAACTCATTGGAGAAGGAGCTCTCAGAACACATGCCAAAGGGATTGTGGGCTGGCGCCAGCCAGTCCCTCCCCAGCTCCCAGACCTACTCCCCCAGTACCACAGCCAGTGACCCGCCCCTACTTTGCCGCCAAAGGCCTAATACCAGCTGCCCAGTGCCAATTAAGGTATGCTCGCGATCGCCCCCTTCAGAGACCCGCACCCGGACCTCCAGTTCCTGTTCGTCGTATTCTTACGCTGAGGACGGGAGCGGTGGGTCCCCCTGCAGCCTTCCACAGTTTGAGTTTTCATCCTCGCCTTGCCCCAATGTAACACGGTGTCCCACCGCCGACTCGCAGGAGGCAGGCAGTGGGACAGATACGCTCTTTGCACGAGTGCGGCCCAAGATAAAGTGTGAGCAGTCGTATGGAACCAATTCCAGTGATGAGTCAGGGTCCTTTTCGGAGGGGGACAGTGAATCATGTCACGCTCGAGAGCAAGGCCCTGAGGAAGTGAGGAGTGAAGTCAGAACCATTTCTGTTCCTCTCATTCCGTCTTTAAAAGCCAAGCCGCTCTCTCAATATGAGCCGATTGTGGTCTACAAATTATTCGTCAGACGTCGCATTGGCATTTGGCCTCTCTCATTCCAGTCACCTCTTTTGTCCGTCGCCTTCCTACAATTCCCTGCTGCAGATGTCCATGCTAAGAGAAAACTGGGCCAGATCTACACTTTCATCTTCTCTCAGTCCCAACCAGAGTCACCGTGGGCTTCCCAGCAGAGCGGTCCACTTCACATGGAAGAGTCGCAGCACCGCTGTGGTTCAGGTTTATGGGGTCATAATCACACTAAGCCCATATATAATAAACCGAGGTTACCAGTATTTAGTGTTCAGCAGGTCAAGCTTCCGTTCCCTGTCGATCAAATCACAAATCTTCCACGCAACGACTTCCAAATGATGGTGAAAATGCACAAGCTGACCTCAGAGCAGCTGGAATTCATTCACGACGTGCGCAGACGCAGTAAGAACCGCATCGCGGCCCAGCGCTGCCGCAAGAGGAAACTTGACTGCATCCTGAACCTTGAGTGTGAAATACGCAAACTGGTGTGTGAGAAGGAGAAGCTCTTAACGGAGCGCAACCAGTTGAAGGCGTGCATGGGAGAGTTATGGGAGAATTTCTCCTGTCTGTCTGAGGAGGTGTGTCGAGACGTGCAGCTGAGCCCAGAACAGGTCCATCACTACTGCCCCATACTGCGCCCCGGCAACACCGCCTCCGTCGCCCCCGGCACCCAGGCCCTGCCCACCGGCAGCATCGACCTCACCACTTGCTCCACCCCCGAACAGAGCTTCCTCAAATCGGCCACTGCAAAAGACGGACAACCGCGACCGGCCCAGTGGAAGACCGGAAACGGGTCCGAAGACGTAGGCAACGACAGGGAGGAGCAAGAGGCTGGCTCCGCCTACCTAGAGGCGGGGCTGTCCCTGGAACAGTCCAATCAGACGGTGACTGTAGACTTCTGTCAGGAGATGACAGATAAATGTTTTCTCTCATTCAGCCATGGCAGAGTGGCTGAGACCTTCTCACAGAACTTCACGATGGTGCTACACCTTTCCATGACAGTGGCAACACTCACTGATACGAAAGAAAGTACGACGGAAAGACGAACGATTCGAATCGTAGTTTCGGCCACCTTTTGCGTCAGCAATACTGTACCATTGGATGTTTTCGAGAAGTGCTTGCCCGGCAGAAAGCTTATTGTAAATAGTACGGTGCATGGAGACGGTCTCGGTAATATTGTACAGACGTATATCCATACTAATGGGATTGCATGCTGCCTGTATGTTTTATATAGTTTGTTTAGTTTCTTTGCCTCAAAATGTAGGCCTCGGAAAAACCGTTTGAATCCCGACGAGTTCACTCTGGTTTAGTTGAGCAAAAACTAAGAGTGTTAATCTTTTTTTTTTTTTCTTTTAAAAATTGGATCTCCCAATAAA

Function

symbol description
bach2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Is expressed in head; myotome; somite; somite border; and trunk. Human ortholog(s) of this gene implicated in immunodeficiency 60. Orthologous to human BACH2 (BTB domain and CNC homolog 2).
bach2 Enables sequence-specific double-stranded DNA binding activity. Involved in primary adaptive immune response involving T cells and B cells. Located in cytosol and nucleoplasm. Implicated in immunodeficiency 60.

NR:

description
transcription regulator protein Bach2b, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09042 BACH; transcription regulator BACH

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_03657039_03691049.mRNA True 3260 mRNA 0.54 12 3656973 3691049

Neighbor

gene id symbol gene type direction distance location
CI01000325_03588211_03636126 MDN1 coding downstream 20847 3588119 ~ 3636126 (-)
CI01000325_03573196_03583093 KATNA1 coding downstream 73591 3572575 ~ 3583382 (-)
CI01000325_03548202_03550329 NA coding downstream 106339 3548041 ~ 3550634 (-)
CI01000325_03538609_03541055 NA coding downstream 115612 3538190 ~ 3541361 (-)
CI01000325_03425085_03427300 CBR4 coding downstream 229181 3424221 ~ 3427792 (-)
CI01000325_03782687_03802593 MAP3K7 coding upstream 89803 3780852 ~ 3804448 (-)
CI01000325_04140813_04189686 EPHA7 coding upstream 449764 4140813 ~ 4189686 (-)
CI01000325_04477362_04503416 ITSN2A coding upstream 786313 4477362 ~ 4503416 (-)
CI01000325_04527628_04530638 MRPL19 coding upstream 836202 4527251 ~ 4530638 (-)
CI01000325_04548811_04554697 NA coding upstream 857591 4548640 ~ 4554697 (-)
G464589 NA non-coding downstream 189336 3467342 ~ 3467637 (-)
G464582 NA non-coding downstream 189679 3460988 ~ 3467294 (-)
G464576 NA non-coding downstream 208478 3444730 ~ 3449178 (-)
G464575 NA non-coding downstream 212543 3440490 ~ 3444430 (-)
G464572 NA non-coding downstream 224858 3428661 ~ 3432115 (-)
G464622 NA non-coding upstream 12099 3703148 ~ 3718392 (-)
G464627 NA non-coding upstream 41219 3732268 ~ 3788530 (-)
G464621 NA non-coding upstream 52600 3743649 ~ 3752010 (-)
G464626 NA non-coding upstream 63475 3754524 ~ 3757759 (-)
G464670 NA non-coding upstream 115816 3806865 ~ 3807098 (-)
G463451 NA other downstream 1300370 2347744 ~ 2356603 (-)
G462516 NA other downstream 2740183 916315 ~ 916790 (-)
CI01000325_00759195_00760323 LYRM2 other downstream 2896605 759195 ~ 760818 (-)
CI01000325_00041052_00044693 NA other downstream 3615058 41045 ~ 46842 (-)
CI01000325_04815250_04816016 CHURC1 other upstream 1120264 4815234 ~ 4816188 (-)
CI01000325_05430077_05434997 NA other upstream 1743149 5430010 ~ 5435253 (-)
CI01000325_05531464_05543064 ITPK1A other upstream 1829725 5528844 ~ 5543064 (-)
G465716 NA other upstream 1935164 5626213 ~ 5628168 (-)
G467570 NA other upstream 3924437 7615486 ~ 7616830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G181919 bach2 unknown NC_053129.1 CM020926.1 3608847 ~ 3610329 (-)
bowfin (Amia calva) AMCG00003631 NA coding CM030121.1 CM030121.1 12156367 ~ 12176632 (-)