CI01000325_05556137_05564928 (UBR7)


Basic Information

Item Value
gene id CI01000325_05556137_05564928
gene name UBR7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5556137 ~ 5565039 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_05556137_05564928.mRNA
AGCCGTCAAGACTACTGATATATCGGCACTTAATTTCTTGACACCAGTAATCATTGATTTCAAATCGCCATCTACTGGTACAGAGAACTGGTTTGTCTGTCCATTTCTGTACTTCAGCTCTCCTTTCAGCTCGCACGCTGCCATATTGAAGATGCACACTGTAACTCGGTTGCCAGATCTCACAAAAACTACACCGGACTCTCTGTCCCCAGTAAAACGTGATCTTGTTGACAGGATGGCGGCAAATGATGGAGAGGAGGAGGCTACTGTATCTCTTGTGGACGTCTTAGAGGAGGATGAAGAACTGGAGAACGAAGCCTCCGCTGTGCTTGGAGGGAGTGATTCAGAGAAATGCTCGTATCCAGAGGGATATGTGAAGCGTCAGGCTCTGTATGCCTGCAACACCTGTACACCAAAGGGAGGAGAGCCAGCTGGCATCTGTCTGGCATGTTCCTACAAGTGCCATGAAGGCCATGACCTTTTTGAGCTGTATACCAAGAGGAATTTTCGATGTGATTGTGGAAATGACAAGTTTGGGGAAATGGAGTGCAAGCTATTTGCGGATAAAGAGAAAGTGAATTCAGGGAACAAATACAGCCACAATTTTTTTGGCTTGTATTGCACATGTGACAGACCCTACCCAGACCCAGAAGATGAGGTTCCAGATGAGATGATCCAGTGTATCGTGTGTGAGGACTGGCTCCATGGTCGGCATTTAGGCTGTGTAGTGCCAGACTGTGTGGAGCTACAAGAGATGATCTGCGAGTCGTGCATGAACAAAACACCTTTCCTTTGGAACTATGCTGCACAAATTGCAGTTCCACCCATAACAAAAGTAAGCCCATGCAAAGGAGAAGGGGACGTGAAGGTGGAGGTAGAAAATGATGAAGAGCAGATAAAAAATGAAAACCTGAAGAGCCCCGTAGATGAGAAGGTGCAGGTCAACGGGACATCCGCCTGTAAGCGGAAACACCAGGAAGAAGCTGAAGGTTCCTCAGAGGACGGCTCGTGCTCCGGTTGCAGGCTGAGAGAGATGAAGGCCTCGGGGATGAGCCGGACTTTGCAGGGTGCCGTGTTCTGGCCGTCTGCCTGGCGCACCAAACTCTGCACCTGCACCGACTGCAAGATCCTCTATGCAGACACAGGTGTGTCTTTCCTCACGGATGAGACGGACACCGTCCTGGCGTACGAGAACAAGGGCAAGTCCACAGAGCAGGCTGAACAAGCGGGTGGAGCCGAGGGTCGTGACCCCTTGATGTCGGCCTTAAACAACCTGAATCGGGTTCAGCAGCTGGAGATCATCCATGAATATAATGACATGAAGACAGAACTGAAGGACTATCTGCAGCGATTTGCTGCAGAAGGAAAGGTGGTGACACCTGAGGATATCCGTCAATTTTTTGAACAGCAGCAAAGCCGCAAGAGACGAAGAGCCAACGCAGGCCAATACTACTGCAGTTAAACCGTCCTTCACCCTGACATTTCAAGCATACCAGCTATATCCAATCATTCATGTTTTTTTTTTTGTTTTTTTTCTTCACTCTTTTTCCAAGGCCATTCCTGGTTTTATAAA

Function

symbol description
ubr7 Predicted to enable ligase activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be active in cytoplasm. Orthologous to human UBR7 (ubiquitin protein ligase E3 component n-recognin 7).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K11979 UBR7; E3 ubiquitin-protein ligase UBR7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_05556137_05564928.mRNA True 1573 mRNA 0.49 13 5556137 5565039

Neighbor

gene id symbol gene type direction distance location
CI01000325_05549713_05553140 TMEM251 coding upstream 2872 5549713 ~ 5554577 (+)
CI01000325_05526039_05530187 NA coding upstream 25950 5526039 ~ 5530187 (+)
CI01000325_05510163_05515246 NA coding upstream 40565 5510163 ~ 5515572 (+)
CI01000325_05498301_05508208 SEL1L coding upstream 47604 5498301 ~ 5508533 (+)
CI01000325_05493231_05497044 AHSA1A coding upstream 58709 5493027 ~ 5497428 (+)
CI01000325_05605406_05607986 NA coding downstream 40211 5605250 ~ 5608429 (+)
CI01000325_05626291_05627850 NA coding downstream 61252 5626212 ~ 5628157 (+)
CI01000325_05655953_05691697 PRIMA1 coding downstream 89801 5654840 ~ 5692630 (+)
CI01000325_05740859_05742551 NA coding downstream 175553 5740592 ~ 5743948 (+)
CI01000325_05765629_05781041 PPP4R4 coding downstream 200590 5765629 ~ 5781456 (+)
G465175 NA non-coding upstream 103391 5445560 ~ 5452746 (+)
CI01000325_05257907_05258833 FOXQ1B non-coding upstream 296861 5256693 ~ 5259276 (+)
G465042 NA non-coding upstream 665543 4890380 ~ 4890594 (+)
G464953 NA non-coding upstream 784831 4763545 ~ 4771306 (+)
G465028 NA non-coding upstream 814439 4741499 ~ 4741698 (+)
G465251 NA non-coding downstream 1312 5566351 ~ 5566593 (+)
G465723 NA non-coding downstream 74179 5639218 ~ 5639651 (+)
G465726 NA non-coding downstream 89020 5654059 ~ 5654334 (+)
G465732 NA non-coding downstream 98012 5663051 ~ 5714405 (+)
G464950 NA other upstream 465199 5058456 ~ 5090938 (+)
G463724 NA other upstream 2827687 2728206 ~ 2728450 (+)
G463566 NA other upstream 2992402 2563155 ~ 2563735 (+)
G462928 NA other upstream 3555253 2000477 ~ 2000884 (+)
G466144 NA other downstream 933727 6498766 ~ 6501978 (+)
G466137 NA other downstream 1052161 6617200 ~ 6619471 (+)
G466236 NA other downstream 1438578 7003617 ~ 7004655 (+)
G466227 NA other downstream 1747044 7312083 ~ 7314812 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding NC_035899.1 CM008302.1 58060925 ~ 58076530 (+)