Gene
RNA
| Item | Value |
|---|---|
| gene id | G462078 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000325 |
| NCBI id | null |
| chromosome length | 10587162 |
| location | 954365 ~ 954873 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU530471 | True | 509 | lncRNA | 0.40 | 1 | 954365 | 954873 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000325_00847888_00849234 | NA | coding | upstream | 104921 | 847664 ~ 849444 (+) |
| CI01000325_00825806_00831039 | NUP43 | coding | upstream | 123255 | 825806 ~ 831110 (+) |
| CI01000325_00795214_00806009 | LRP11 | coding | upstream | 148271 | 795214 ~ 806094 (+) |
| CI01000325_00719124_00749486 | ANKRD6 | coding | upstream | 203929 | 718219 ~ 750436 (+) |
| CI01000325_00707344_00713775 | NA | coding | upstream | 240482 | 706377 ~ 713883 (+) |
| CI01000325_00974944_00977537 | NA | coding | downstream | 17323 | 972196 ~ 978022 (+) |
| CI01000325_00986217_00993874 | CHRNA2B, CHRNA2 | coding | downstream | 31344 | 986217 ~ 994193 (+) |
| CI01000325_01041593_01061870 | NA | coding | downstream | 86649 | 1041522 ~ 1061929 (+) |
| CI01000325_01175992_01194875 | RHOJ | coding | downstream | 221119 | 1175992 ~ 1195671 (+) |
| CI01000325_01342491_01349333 | SIX4B | coding | downstream | 387254 | 1342127 ~ 1349604 (+) |
| G462073 | NA | non-coding | upstream | 10331 | 943824 ~ 944034 (+) |
| G462071 | NA | non-coding | upstream | 11441 | 942521 ~ 942924 (+) |
| G462067 | NA | non-coding | upstream | 18956 | 935169 ~ 935409 (+) |
| G462059 | NA | non-coding | upstream | 37644 | 916452 ~ 916721 (+) |
| G462058 | NA | non-coding | upstream | 38576 | 915581 ~ 915789 (+) |
| G462108 | NA | non-coding | downstream | 76537 | 1031410 ~ 1087149 (+) |
| G462177 | NA | non-coding | downstream | 244572 | 1199445 ~ 1199676 (+) |
| G462178 | NA | non-coding | downstream | 250757 | 1205630 ~ 1206757 (+) |
| G462167 | NA | non-coding | downstream | 276613 | 1231486 ~ 1231897 (+) |
| G462202 | NA | non-coding | downstream | 297162 | 1252035 ~ 1252355 (+) |
| G462730 | NA | other | downstream | 662723 | 1617596 ~ 1620194 (+) |
| G462778 | NA | other | downstream | 873209 | 1828082 ~ 1896815 (+) |
| G462928 | NA | other | downstream | 1045604 | 2000477 ~ 2000884 (+) |
| G463566 | NA | other | downstream | 1608282 | 2563155 ~ 2563735 (+) |
| G463724 | NA | other | downstream | 1773333 | 2728206 ~ 2728450 (+) |
