XLOC_013268


Basic Information

Item Value
gene id XLOC_013268
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 10921197 ~ 10925204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027263
ataatgttatttaagatgttttttttcagaCCAAAAGAGAAAGTAGTTCTGTTACGGATTCTGTCTAGTATTAGATTATTTTGACCCTCACCTTTTCCATTtagtttttgcatattttaataatttgcttagtattattaaatattcaaaaatgttcaaaattatctcttcttaagtgtatcacactaaaacttataataattaattatacagGTAATATTATTCACCATCACAATCATGTTTAACTCCCATCTTTATTCAATTAGTAAttttaaaatcagtatgtgaTGCCAGTGGCCAGTCCCCTGAATCACAGGACCTACTGACCACCTCTGaacacactgctctctggtttgGGAAAGGCTTTCCTCCACATCAGCCATCTCAGTCTCCAGTcaaagagtttttttgttttcagcaggggacattgaaaatgtgcaaagacctcagcTTATGTCCGAAAACATAGATATGCTGATGGGGggttgttttttaaaatagcagtttagttatggcagaaaatatatttagaaaaaaatgtgcagtatttaagaaaaaaaacaaaacaaaaagactcTTCACGTTAAATTAGTTtcaaaacattttgttaaaaCATCATGACTAAATCATACATTTTGAGATTCTAGTATTGTGTATCGAATCGTGAGTCAGTACATCCGTAATTAAAagtgtcaaataaatgaataaagcaaCTAAATGAAACAATGGAATTAGTCATTTTTTTAAcaactgcattgttttattgcctCTGCATACATTCAACACCCTATACAGTATATGCAAATTAGCAACATGAAGCATTTTCAAGAGccaacaatattttttaaaaattaggaTTCATTTACTTTACATATTATACAATTTTCACACGTTAATAAATACCATAAAATCTGTCAAACATTTTACAGTCTAAATAACTATTGTTGACCATGTGTACGGTTTCATTCACAGTTATCTGTACTTACAAgtaaaccaaacaaaaacaaaacaaatctgtgcCCATCTATACAGCTCAACGGTGACTAAAATGAAATGTACACTTAGGAAGAAGGCATGTTTGTTTGCAGTATCGATGTTTCTGAGTCGAGTATGGCTACAAGCTTCTGCTGTTGATCAGCACTGGTGTCAGTCTGAGGTGCTGAAACGTTTTCATGTGATAAAAAACTTTAGAAAagacaattataaacaacacaaGTAAACTCTGTGGATGTGAAGAGCGGTTGCAGGAAAAGTTAAGGAAAGGCATGTCGCTGCAAATCTGGAGAAAGTGGAAAATACACACACTACCAAAAAACAACTGTTTTAATTATCTGCTGGCAGATAATTAGATGTGAAAATGGCCAAAATCTCCATCTGATTtgatactaaataaaaaaagttaaaacctGTGGGTGCgttaaaaatgtaagttcaccAAAAAGTGTAAATCTGCTGTTCATTTTCTCAATTTCAGGCCACTTGGgaggattttacatttttttaagggatagttcacataaaatatactatttactcaccatttactcatcccTCAAGAGCTTTCAAACCTTTGATTTTCAGTTTTattgtgttaaacacaaaataagatgttttgaagaatgttggaaaccggtaagcatccataataggaaaaaatactataggagtgaatggttaccagttttcaaaatatctacacATTACTTACCAtctactcatcctcaagtgtttccaacattttgcaAAATATCTACACTTTACTCTCCAtctactcatcctcaagtggttccaaacccttatgagttacttttttttctctgttgaacacagaataagatactttgaagaatgctggaaacctctaaccatccatagtaggaaaaaaatactataaaagtcaatggttaccagtttctaacaCTTTTCAAAGTATCTACAATTTACTCATCCCTCAAGTGCtttcaaaccattatgagtttctgtttttttttctgttcaacacaaaataagatactttgaacaatgctggaaactggtaaccatccataatagaaaaaaatactacagaagtcaatggttaccagtttttttaaaatatctacaaTTTACTCAGCATCTACTcgtcctcaagtggttccaaaacattatgaggttgttgttttttctgttgaacacagaataaGATACTTTGAACAAAGCTGGAAACCGTAACCATGCATAATTgggaaaaatactatagaagttaatggttaccagtttccaacatttttcaaaatatataaaatttactcaccatttactcatcccTCAAGcgtttctaaacctttatgagtttctttttttctgttgaacacaagatattatgaagaatgctggaaactggtaaccatccataataggaaaaaaaatactatagaagtcaatggttacccgtttttaatatttttcaaaatatctacttttgtgtttaacattaaaaaaggtaaaagcggtttggaacaagtaaaggttgagtaaattattaacattttagtttttaggtgaactaaacTTTAGCTTAATCTCTTTAGGTTAAGCACCAAAGAATATTTTTGTGATCAGTAGTCAGTGACTACTAGCATTTTGAGAGTTTATATAGACTATATATAGGCAAAACTATATTAATATCCCTGGATCCTGATGACACACCGATGTCTTAAAAAACCACAgcatatgtacatttttttggtgaactaacaaTTTAAAACCACATAACCAACCAAGCAACAAAATGCATAACACATCTGGCTGtatattatatgtgtatatatatatatatatactcttaCGAAATCTGGAGGTTTATATATGAATCTCTATGTATTTGTACTTCACTGTTTATGTAAACTATAGTACAAGTATCCAATATTTATGGATTACAAATGATTGTAAACCGTCTTTCAGGATATATGTGAAGCTGACATCAGCAAGTATGTAACATCAAGATCATTTTGATCCCATCGTTCACCAAATCTCTCGAATTATCAGGTGGATACCGATGGATTCGAACATTTACAATTGTCGATGCTACAAACAAAACGCGCGTCAATCGCCGAGAGAAAGTCCATCACGTGGAGGTCTGATGCCTATATAGTGTGTTATATTACACAGGATAGAAGTGCGATCGAAGAGAAAACACTTGTACTTTTGTTTTCCAGTCAGTAGTGAATGTAGAAAACGCATTAAAAGGAAATGAAGTCCAAAAAAAGCGGCTCGTCACTGAAAACGTAACAGTTGATTGACCAGACATTCTCTGATAAACAAGACTGGCTTTATATGTAGAGTCATTTAGTCTCAGACTTCCTCAACATCAGCAGGATTGATTGATATGTCCCagaaattactaaataaaaatttatgtTCTCCTTATTTCCGAAATGGAGAACGCCTTGCCTTGGCTGCCGATTGGACAAAACGCCCTGAGTCGTGCCAGGAAACCTCATAAAAACATCACCATCGAGCTCATGAATAGGTTTGTAAACGTTGTTGACATGCCCAATAAAACCAAGAGCGACTCTTTctgagatttagatttttttttgtactccCTGTAGTGAAGCGCTGGCGGGTTAGATGGTTTTTGGACATTGTTATGTTAAGCCCAGTTGAGGTTGAATCCTTTGGAGAGCATCACCGCCTCCAGGTCTTTATCTTCTTCCTTCTCCCTGAGTCTCTGTTCCTCCAGCAGGGCCACCAGAGAGTCTCGCTGCTCCACCACCTCCAACATCTCATTCAGAATCTGCTTCTCCTCTGCCAGCTCCTCCTCTGTCTTCAGATGATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027263 True 3821 lncRNA 0.34 3 10921197 10925204

Neighbor

gene id symbol gene type direction distance location
XLOC_013267 rbm28 coding downstream 207783 10692945 ~ 10713414 (-)
XLOC_013266 CR450781.1 coding downstream 479739 10441343 ~ 10441458 (-)
XLOC_013265 lrrc4.2 coding downstream 623035 10296228 ~ 10298162 (-)
XLOC_013264 LO018242.1 coding downstream 840993 10080090 ~ 10080204 (-)
XLOC_013263 NA coding downstream 856562 10062475 ~ 10064635 (-)
XLOC_013269 tspan33b coding upstream 42257 10967461 ~ 10995410 (-)
XLOC_013270 tspan9a coding upstream 90999 11016203 ~ 11317187 (-)
XLOC_013271 NA coding upstream 491514 11416718 ~ 11555636 (-)
XLOC_013272 CRACR2A coding upstream 631416 11556620 ~ 11595567 (-)
XLOC_013273 NA coding upstream 788081 11713285 ~ 11716322 (-)
XLOC_013384 BX323829.1 misc upstream 8616898 19542102 ~ 19542231 (-)
XLOC_013262 CR762488.2 non-coding downstream 1116733 9804348 ~ 9804464 (-)
XLOC_013261 NA non-coding downstream 1212424 9691524 ~ 9708773 (-)
XLOC_013277 NA non-coding upstream 1421092 12346296 ~ 12354274 (-)
XLOC_013278 NA non-coding upstream 1433179 12358383 ~ 12363329 (-)
XLOC_013281 AL929229.2 non-coding upstream 1606842 12532046 ~ 12532160 (-)

Expression


Co-expression Network