G468718


Basic Information

Item Value
gene id G468718
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10386043 ~ 10388152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU537987
GTCAATTTTATTTCAGATTTTAAAGCTGTATTGATGAGTATCGAATGTGTTAGAAACAAAGAGGCACAAAGACATGAAGAACACACATCACATAATAACAAAAATAAAAGCTGACATCTCCACCTTCAGCCAAACCACAGATTTGGGAATAGAAAAAAAAAAAAAAAAAAAAAAAGGTTACATCACATTATGGTATTTTCCTGAACTGTCTTTTCTTGTCATTTCCGTATTACAAAATACAAAAGCACAACCATCCCAACACACTTTACTCATTCAATATTGACTACACTTTAGCCAATATGATTTCACTGTAACTCACAACCAATGCATCAGCCCCTTTGGTTAACATGATCATTGTTATTAATTTGAAAACAAAATGGCAAATAATTTTTTTTCATGAATTTTCGTAAGGCTGCTTGGTTTTTTTTATTCATTTGTGCTTCTGTCGACAGTATAGGCAATTTGTTTAGAATAAAGGTCTGCTTTCTTTACATTGCAGTAACTTGAAGGGAATGATTATGTAAATACACCCAAGTATTAACATCAAGTCCTTAAATAAATGTAAACATATACATCTTTTGAGGTCAGAATATTGACCCACTTCACTTAAAATCATTACTGGAGCATCGTTCTGATATTTTTTGGAGTGGACTCATCATTCAGGTGTTTTGTGGTGAACTTGAGGGCATTAAGGAGACCTTCAACATTATCTGCTGGCTGATCTTTTAAGACTTTAATGCATCCTTTCATATCAATTTTTGAGGATTTGTTGAAGGCACCGTTAGGATGTACATGGTCATAGAGGATAATAACCCCCACCATCACCCTCATACAAAACAGAAGTGTATCTTCACTGTTGAATCGACTCGTGTATTCTGGTGTCTCCAGCATGACCTTGCAAACACTTGCCATAGTGCTCAGGCAGTCTGTGGTGTTCTCAAGAGGTAATGTCTTATTCTATAGAGAAAAGAATTAAAGGAGTAATTCACACAAACATTTCAATGCATGTATATTGATTATTATACACTACGACCATTCAAAAGTTTGGGATTGGTAAGATTTTTTTTAATGTTTTTGAAAGAAGTCTCTTATGCTCATCATGGCTGCATTTATTTGACCAAATGATTTATTTATTTGATCATATTTTCAAATGATCCATCAGAAATCATTCTAATATGGTGCATAAGGGACATTTGTTATTATCAATGTTGAAAACAGTTGTCCTGCTTAAAGTCCCCCTGTGGTGAAAATCGAGTTTTTAAATGTTGTTTATATGTCTATGTGGTGTTTTTAATATGCTTGAAGACAAACCATGTGCAAATTCATGTCAACACCATTGCTGAGTATTTTCTTCTTAAAACTGCAGTGACAAAAAGACAGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU537987 True 1383 lncRNA 0.34 4 10386043 10388152

Neighbor

gene id symbol gene type direction distance location
CI01000325_10330659_10345549 FZD3A, FZD3 coding downstream 40494 10330659 ~ 10345549 (-)
CI01000325_10259809_10261986 LFT1 coding downstream 124057 10259473 ~ 10261986 (-)
CI01000325_10223671_10247196 KIF26BB coding downstream 138511 10222845 ~ 10247532 (-)
CI01000325_10200118_10220665 SCCPDHB coding downstream 164792 10199979 ~ 10221251 (-)
CI01000325_10092490_10094515 STMN4 coding downstream 291528 10092414 ~ 10094515 (-)
CI01000325_10486953_10491074 PLA2G7 coding upstream 98124 10486276 ~ 10491074 (-)
G468829 NA non-coding downstream 30008 10353364 ~ 10356035 (-)
G468828 NA non-coding downstream 33747 10351998 ~ 10352296 (-)
G468711 NA non-coding downstream 78194 10306459 ~ 10307849 (-)
G468710 NA non-coding downstream 83310 10292050 ~ 10302733 (-)
G468705 NA non-coding downstream 117505 10257268 ~ 10268538 (-)
G468861 NA non-coding upstream 26983 10415135 ~ 10437849 (-)
G468876 NA non-coding upstream 47116 10435268 ~ 10469485 (-)
G468885 NA non-coding upstream 72434 10460586 ~ 10463677 (-)
G468850 NA non-coding upstream 84581 10472733 ~ 10473902 (-)
G468905 NA non-coding upstream 114117 10502269 ~ 10506615 (-)
G468823 NA other downstream 69358 10316130 ~ 10316685 (-)
G468702 NA other downstream 193701 10023665 ~ 10193979 (-)
CI01000325_09286047_09286556 ERH.L, ERH, ERH.S other downstream 1098719 9285532 ~ 9286556 (-)
G467741 NA other downstream 1688460 8679172 ~ 8697583 (-)
CI01000325_08571807_08594165 NA other downstream 1814565 8568722 ~ 8594736 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 misc CM030121.1 CM030121.1 37832623 ~ 37847720 (+)