XLOC_013387


Basic Information

Item Value
gene id XLOC_013387
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20140072 ~ 20149097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027294
GCTTAAACAGTTAATGACCTTTATCCACCAATTGAACACAGTTCAGGATGTTTACATGACCTTACACGTTGAGCGTAAGAGCTTGCATGTAAATGCACCCATTGATTGATCGCTAATCTGAATATTGGAGTAGAATGCGGCCATTTCGATGCGCATTAGGGCTCAGAGAGCTTTTTTGAGAGAAAGCACTCTAATGGAGACACAAGGACACGAAAACTCACACTGAGAAAAGAGCAAGATCTCCAAGACTCTTAATGGCAGACATAATAGCAGAATAGCCATTTTGCTATATGGTACGGTCAAAACATAGCAGGAAAAATCTGTATTGACAGAACCTTAGAGAACATAACAAGAGGGCTGGGGTGAACGGATGGATTTCATTTCCACAGCAATCTGTCTGACAATGGCACGTCTTTAAAAAAAGGACTAATTTCATCGATTAAAATCGAAGAGTGCAATTATGATGGCATTTGTCAGGCGTTTAATATGAGCTGCTCTTCCTTGCCAGCGCTTAACAATGACACAGCAGAAGAGGCCAGCTGAGTTAATAGCAGGACCATTTCTCTGAGACCAATACTCAGAAACCCCCTCCAGGGCCCAGTCAATGTCACAGCTTCTCGTGTCGCATCATTTCCCTTGCCAGGAGGGGGAGAGAGGCCAAGTATTGATCAGCCTGTAATCAGACAAGCTGTTTGGAGCAGCAGGAAAAACTCCTTGCAGAAGTGCCTCTTGGCTTCACCGGAGATGGAGTGCAGTTTTTGTAGCCTTGTTGGAGGGATGAGTGGGGAGGGAGATGGCAGTGATCCCCTCGGCTGACACCATCCATTAAGTCCGGCCTTGTCTGACAGCGCACATCTGATCTGCTGGCTGAGGGAGAGAGACGAATGTGGACTTCTCTGAGGTGCATCAATGACAGCATCACCAGGCGGACCACAGAGAACCACACACTAATGGCATAAAGAGTTTTGGGATTGCTGGAATAATCTAATTTATAATTGAGTACGACACGTGAACGGTGGGGTCATAAAATCAGAGGAGAAATGACAAGAAAGCAAACAGCCTCCGAGTGTTTTCACAGCGagcagaaggaggaggaggaggaggagtgctGTGTGGGAATATGCAAATGAGACAGAGACAAAGAGACAGGGAGTTATAAGAGAACATAAACAAAGCTCTGTAAACAAACCTCCTCAGGTCACTCCGCAGTAGGAGAAGGAGATTAAAATAGGAGGGTGCGAATGTGTTTGTATACGCCTGTGAAGGAGGAGGAGGTGCATCCACATCATCACACAGCTCCTCATGACTCCCCGCTAAAGCACGGTACCTGCACGCGTGGTTGCTATGGAGATCCAGTGTGGCGTAAGAACAGAGGGACCAACCGCTGAACCGGCTCTGGCTCTTAACCCGGAGAAGGGAAAAAAAGCGCACACACCAACAAAGGGAATGATTTATTAAGTCCACTGTATTCTAAGCCCCATTATCCAACCCACATAAAACCTGCAAGCGTTTCAACTGATCTGATTTATGTTGAAGGCAATCTCAAAGGACACCTCCCTTTCCAAGATGCTCTCTTATTATCCTCGCCTGGCTGGGCTGAGCGGAAAAATGACATGTCATAATAATCTTGAGAACGGCAATCGGATGGAGCGGAAACGCACACGCTCCCCACCTTATTTACAGGCTGAAATGTTTTTCGTCGGGGCGAAAAAGCCTGACATAATTTCCttataaataattgacttctCCCATGTTAAAATCTCCTGAGAGGCTTTGGGCTTTATTCACAAGAGGCCACTGCAGCATGCGCTGCAAATTAGCCTTTCACCGACGCCTCGTCTGCTCGCCAGTGAACAATGCACCGAGAGACTCGCTCTCCTCCCTTTATGCCTGTCCCCAAGTAATAACCTTCAACTAACCTTTAAACCTCGGTGAATAATTTAAATCCTATTTTCATATCAATGGGGGGTATTTTATCCGTATACTTTGCCGTCAGAGGGAGGCATAATAAAGTTTTCCCATGTGATTGAGGGAAGAGGAAAGGGGGGGTGGGGATGAGTGAAAAACGAGCGgctgatagagagagagagagagagagaggaaggaggAGGTGGAGGGAGCTGGAGATGCTATCTGAAGACATTAATGCAAGCATGAATTATTCAGTAATGACTACAAGatctgtcataaaaaatgctgctaacATCTGCAGCGTGTTGCGAGGGGGCTGTGGGGAGTGGGCAAGCCGCCGAGGAAAGGCGCTGAAGATAAACATGACAAATTGGCAGATCATCTGTTCAATTAGGACAGCGGAGCAGGTGCACCCAGCGAGCCAAGCTGTACCACACGGTGACACACTTACCAGCCAAAAACCAAGGGCATGATGGGAAATACCTTGTTTGCATGACAGTGATTTAGAGCAGTGTGCCATTGGAtatccacagaaaaaaaaactagggggagaaaaaaaaaatctgatattccCCTTGGTGCTCATTAAAATTCGACTGCAGCCTCcaccctctctctttttttttctctcctcgctctctctctcgctcgctccaTCTTTGTGCTCTTGGCTCTCTCTTAGCTGCCTCCCTGGACCTTCCAGGATCATCTCTTATTAATTCATAAAACATACTGCTCCAGTGATTGGGCCCTGGGAGCAGCAGAGCAGCAAAACATGAGATATGGGAAAATATCACACGTGTCTGCAGCCAGGCtgcgagagagagcgagagagagagagagagtaagtgGTGAACAGGGAACGAGGACTGTGTATATGAGACAGCAAGGGGGAGGGGGGGGCAGGAAAGgaggtagagagagagagaaagagggaaacATGTTTTGAAATATTAATCCATGGCTCTGGCCGTGGGCTGGTACACAGAGATGAAAAAGGCGAGAGAACCTTTGAAGCGGGAGGGGATGTTCTCTGCTGTCTCAAGGTAGACTACGCAGTCGGCCATGTTGGAAAGTAGAGGAGAAGAGACATGACAGCACTCCGAATGACTAACTTTCACCGCGGCCTCTTAATATTTCAAAGACGCCTAATTGGTTCGGCAACGTCTGGTCCTTCTAAAAAGATCCTGGCAATCTGCCTGAATGTACGCCAATTGCTTCAATCCAAATATTTCCTCGTGAATTTCCATCGCAAATGGATGCTCTTCAAAAACAAATTCGCTAAATCACTCCGAAAAGAGCACATTGAGGAAAGTAATTATCATTAAGACACACTTTGGCTAAGCATCTTGATGAACATGCTTTTCTATATCCAGAAGAATAACATTGAGAGGGCatcctctctctttctttctctctctctctcgctcgctcatTTTCCACCGTGCAGCACCCTGCTGGGAAACTCTAAATTACCCACAGTCTGGCTATTCTGTACTCATAATAATGataaagtttcttttttctaattATGCAAAGAACACTCAATTAGCATAACTCGTCCTCTGTGTCACTACAAACAGCAGAACGCCCCGAGGGGCTGCCATAGTTTCGCTGCAcggctgttgtttttttttttttccttcctctCATTGTTTTTCAGCGCGGTAATGAAGATATTTGTTAATGAAGATATGAACAAGCACCAAGACCACCTTCTCCCCCACCGACTGTGCAGGTGGATGCCGCAGGGAAATAAAACGCTGGTTTAATCATCGCCCCCTTCAGGTCTGCTGCGGTACCGCAGTGACTCAGGCCTGCAGGGGAGATTAAAGATGATCAAATAAAAACGGATCAAAAACACCAAAATTCTTAACCCTACCAAGCAGAATTTTACACCTTTGGGGGGAGGGGGATTGTTAAAAAGCAAGCTGCACTACTTAAGACCTGTTGGCGCTTCTGTTCAGGATGTGATAACGTCCATCAAAAAACACCCCGGGTTCAAATATACATTTTGCAAACACgtgcgcgtgcacacacacacatgcatgtaggCTAGGCAGTCCAGCTCTCATCAAGAGGATGCATAGCAGAAGCATATGTCACTATAAATTCTGAATCCATAGAGACATTGGCTAGAGGCGGGAGACAGACTGGAAATAATGGACATGGAGGAAGTATAGAAAGATGAGATTGCAGTTGAGCTTAAATAATTAGGCATGACATCGCTAATAAGTACACAATGAACCCTGAGCTGCTGTGTTGGTGATCTGTCTGTGTAACTCTGGAATCTGGGATGCTCGCTGACAGAAAAGAGAAAATTACTGTAGAAAAGAAGATGAATACAAAATTGATTTATGGAGCCTGAACATAAGGGTCATTTCTGTCATACTTTTCATTGTCTCATGTg

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005838 proteasome regulatory particle cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027294 True 4321 lncRNA 0.46 2 20140072 20149097

Neighbor

gene id symbol gene type direction distance location
XLOC_013386 NA coding downstream 255778 19883591 ~ 19884294 (-)
XLOC_013385 aagab coding downstream 320260 19812608 ~ 19819812 (-)
XLOC_013383 snapc5 coding downstream 648910 19487702 ~ 19491162 (-)
XLOC_013382 lctlb coding downstream 655153 19463425 ~ 19484919 (-)
XLOC_013381 CT863714.7 coding downstream 684831 19455144 ~ 19455241 (-)
XLOC_013388 NA coding upstream 136568 20285665 ~ 20319873 (-)
XLOC_013389 kif23 coding upstream 286724 20435821 ~ 20458840 (-)
XLOC_013390 paqr5a coding upstream 310791 20459888 ~ 20466061 (-)
XLOC_013391 ighmbp2 coding upstream 367430 20516527 ~ 20532339 (-)
XLOC_013392 dennd11 coding upstream 392219 20541316 ~ 20560059 (-)
XLOC_013384 BX323829.1 misc downstream 597841 19542102 ~ 19542231 (-)
XLOC_013380 NA non-coding downstream 685205 19454800 ~ 19454867 (-)
XLOC_013379 CT863714.2 non-coding downstream 687191 19452751 ~ 19452881 (-)
XLOC_013378 NA non-coding downstream 687794 19452210 ~ 19452278 (-)
XLOC_013395 BX470130.1 non-coding upstream 484692 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 697093 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1563199 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1934675 22083772 ~ 22083886 (-)

Expression


Co-expression Network