CI01000338_01379213_01382737


Basic Information

Item Value
gene id CI01000338_01379213_01382737
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000338
NCBI id null
chromosome length 1590771
location 1378630 ~ 1384969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000338_01379213_01382737.mRNA
GTATAAAACAGCTCTTACAAACATTCACAATAGCAAGTACCTTCCAAAATAAAACCACAACAATTTAATATGAGATACAAAAAAAAAAAAAAAATACGTTTTTGTGTTTTTATTTAAATTTTCATTTAAGTTTCTGCTGACAATGGTGATCTTTTTTTCATAAAATGTATTCCACTAATACATTTATATCTTGTTTTGAGCATAAACCTCATTAAATTTGTTATAATTATGTTTCAAAACGAGAAATAAAAATTTGTCAAAAGGATATTAAAATATTCTGTGAATATTTTATATTGATCTACAGGTGTTTAGATATTTTTCCCGGAAAACAAGTGAAATACTGCATATGGAAATTATTATATTTTGAATTAATTTTATTTTTCTATTTTCTTGTGCTGTGTGGGCCTAGTAACAATAACTGTATTATGGTTACCATGGTGAGGGTGACATCTTAATCTGCTGTCAGACTCCATCTGTTTCCTCGGATTTAATCTGGTTAGCTCTCGAAAGACTCCAAACCACACAAACCAAAGTGGAGACGCGTGCAGGACTGAGTGGATGAGCGTTTCATGTCGTCTCCACCATGCCTGTGTTTTACACGCCGATCCCACATAACCTGAGAGTGGGTCTGGCTCATGTCAGCGGGTCAGTGTTTATAAATAACAGGACGCGAGACAGTGGAGACTTCAGGGACCCGTATCAGGATAATGAAGTGTGCGCTGAGGTCTCGTCTCATCTCCCGCTGCAAATGCTGCTGTACTTCAACATGTTCTTCTTCCCCTTCTGGTGGATCTCTGAGGTGATAATGCTGCATTTAAAGTTCTGGTATCTGCCAGCCTATTACCAGTGTCTGCTGGTGACAGGGATGGTCCTGATTAGCATATTTGAGCTGTTGCGGGTGTATCTCGGTTATGTTGGGAATCTCAAAGAGAAGGTTCCAGAGTTAGCTGGATTTTGGCTGATCTCCTTCCTCTTCCAGCTGCCTATCCTCCTCTTCTTCATCACTGATCAAGACATCATCATTCTTCCTCTGGAGCGGGCCGTTCACTCTCTCTATCTGGCCTTCCTCCTGGGCGAGCTGTTGGCCTCGTTTCTCACCCTGCGTGTCATGACTCGTAAACTCGCCCAGCAGTTTCACATGAGGCAGTTCGGCCCCATCCAGGGTCTCCATACAGCAGAAGCCCTGCCTATGTTTGGACTGCCTCATGGGGGCAGGAGTGTGCTTCCCGTGAGGGACATACAGCCTCACTGAGAGATGATGTGAAACCTGGTGGTTAAAGGGTTAGTTTACCCAAAAATGAAAATTCTGTCATTAATTACTCATTCCACACCTGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCAAGAGAGGTATATGACTCGCCCATAGACAGCAATATAATCACCACTTTCAAGGTCCAGAAAGGTACTAAAGACATTAATAAAACAGTCGACGTGACTGCAGTGGTTCAACCTTAATTTTATGAAGCGACAAGAATACTTTTTGTGCGCAAAAACAAAAATAACGACTTTATTCAACAATCTCTTCTCTTCCCTCTCATTATCCTTACACAAGCTAATGCAGTAAGCACAGTGAAGGCTTCTGTGTTTATGTCCGAATGCCGGCTCAGTATTGGCGGAGAATGATCATGTGAACAGCACGTGCGTGTGATGCTGATGCAGGAGCCGGCCAATAATGAGTCGGCGTTCTGACGTAGAACCTGGAAGCGCTGAACGTAAAGAACGTATGGGAATGACACAGAAGAGAAGAGATTGTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCATACAAAAAGTATTCTCGTCACTTCATAAAATTAAGGTTGAACCACTGCAGTCATGTCGACTGTTTTAACAATGTCTTTAGTACCTTTCTGGACCTTGAAAGTGGTGGTTAAATCGCTGTCTATGGGCGAGTCATATACCTCTTGGATTTCATCAAAAATATCTTAATTTGTGCGCCGAAGACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGTGTGAACTAACCCTTTAAAGATCTGGGCAGATAACCGAATAGTTGGTATGGTCTTCCACCAATGTGACCTTCAGCAATAAGTGCACTTCTTGTAATAAGAGTATGCTATTTGGTAAATCTACAAACCCATGACCAGCAGTAGTAAAAAAGCAGGGGGTGGGGCTAGTTGTCACACAGGACATTGCCACAAACACTTTAGCTCACTAACCATGAGGTTTGGAGTTTAAACAGTTCACAAATCAAAATGTGCAATTACACAAATGCATGTTTTCTCTAGTTCAAAACTGCTATAAATTGAATCAACAACATAATGAAGTCAGATTTTAACTTGAAGACTGGGATGTGTTCTTAACTAATTTTTCTAAAATTTGAAAATTATTTAATGAAAGGATCCCATTGTGACAACTTACCCCATATATGATGGTAACATGCACCATTATTGGCAACAACAGTGAAAATGTGAAACAGTGAAAAGTTTTCTGTTTGAAAAAAGTGAACTGTTTTCAACATTGATAATAATAAAAAATGTTTCTAGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGCAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTAAAATATATTCACATAGAAAACAGCTATTTTACTTTGTAATAATATTATTTCACAATCTAAATTAAATTTTACTGTACTTTTGAGCAAATAAATTAGTGAGACTTCAATCTTACTAACCAACTTTTGAATGATAGTGTATAAATAAAAATATTACATATACTAATATATAAATAAGATATAAAAAAATACATAATCAATGCAATTGCAATATATAGCAAATGCAAACAAATGTGATATATCATCTAGACACATGGTGGCGCTCTGAGACTTTCCCTCACCAGTCCACACTGCTGCAGAACACAGAAGAATGACTCATCAGCCTAAACTCCCATGAGGAGGAGACACACATTAGACTTACTCTCACTTCCATTACTGTGACATGAAGCTGGCTGGGTGTTTCAGTGAACACATTTGCAAAAATGAAGTATGATGTGATAACAGTAAAATATATCCAACTATTATTGCAAATTTAGCTAACAAAGTCCGTATAAACTGCATTGTAATTGGGATTACCTTCATAAAGGTATTCATAATATAGATTGTAATACATTATTGTGACTTTGCAAAACTACTTACAATCAGTTATAATACATTTGAATTCATGATTACACCTTTAAAGAGTATAATGCATTGTACCATGGTCAAGCAGAAAACTAAAAGGGTTAGTGTTGAAAATTCATATGAGAAAAAAATTGACACATGAAAACGTGCTTTATAGTTTTTGAAGGTGCAAACATAAAATGCTATACATTACAACTGTGGTGAAAATGTA

Function

GO:

id name namespace
GO:0036038 MKS complex cellular_component

KEGG:

id description
K19384 TMEM17; transmembrane protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000338_01379213_01382737.mRNA True 3484 mRNA 0.37 4 1378630 1384969

Neighbor

gene id symbol gene type direction distance location
CI01000338_01376276_01378219 NA coding upstream 263 1376274 ~ 1378387 (+)
CI01000338_01335268_01354918 SCARF2 coding upstream 23712 1335268 ~ 1354918 (+)
CI01000338_01171674_01171967 NA coding upstream 206280 1171509 ~ 1172350 (+)
CI01000338_00729840_00736001 NA coding upstream 642496 729840 ~ 736134 (+)
CI01000338_00703034_00706340 GSTT2 coding upstream 672088 703034 ~ 706542 (+)
G479942 NA non-coding upstream 185153 1193245 ~ 1193477 (+)
G479885 NA non-coding upstream 300540 1077785 ~ 1078090 (+)
G479884 NA non-coding upstream 301794 1076163 ~ 1076836 (+)
G479841 NA non-coding upstream 358833 1019589 ~ 1019797 (+)
G479755 NA non-coding upstream 525619 852713 ~ 853011 (+)
G480008 NA non-coding downstream 42439 1427408 ~ 1487947 (+)
G480561 NA non-coding downstream 129700 1514669 ~ 1514912 (+)
G480567 NA non-coding downstream 145411 1530380 ~ 1530584 (+)
CI01000338_00424137_00425715 NA other upstream 952493 424039 ~ 426419 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029895 zgc:112294 coding NC_007116.7 CM002889.2 11407535 ~ 11414648 (+)