CI01000339_02355753_02358594 (ZDHHC23A)


Basic Information

Item Value
gene id CI01000339_02355753_02358594
gene name ZDHHC23A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2355159 ~ 2359747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02355753_02358594.mRNA
CTATAAAAAATATTCACTTCCCTTGAACTTTTTTGTATTCAATTAATTGTATTTTCTTATATACATATTTATGTCAGTGATCATAACAAAAACCCCTAAATTCATTTAAAAAAAAAAAAAACAACACACACAGAAAAAGTGTGAGTATTCACTAATAAGAAACAATTAATTAAGAATCTGTCCTCCAAAATTACACAAAAGAGCAAAGAGGGCTGTGGCACTTACTGTTTTGCATATTTCATAAACCTATTTCATAAATTAGCGCATTGTGAATCGTCTGATAACCATCAAGATCAACAAGAAAAACAATATTGACAAAGACTGATTTTATGTTATTTCTTTCCAACCAGTGCAACGCATGCTTTTTTCACAAAGCTTCTGATGTAAAAAGCAGCAGATGAACAGCAAGGAAGCTGAACAAGAAATCCACCTGCATCTGTTATGTCAGCTAACTGCTAAAACTACCAACAGCCCTGAATCAACCCTGTCCCAAGATGAACAAACCCTTTCCACTTATTTGAATAAATGTGATTAACCGAACCCTGAAAAAAGCTTGATCTCACAGTGGAAGCAGATTGTCTCTGACACAAAGAGATGAAACGAGAACGTTTTAAGCCCCCGCAACCAGATGACCCTCTGTGCTGCTGTGGAGACATCGACCAGCAAAGAGAGTACTGCTGCTGTGACTGTGAAGAACTTGATGATGCCTGTGAAAGGTTACTCAGAGGAGAGCCAGACAAGCCAGACATCATCTCTCGTTTCATCTCTCGTATGGCTGATCGTTTGGGTTTGCCAAGTTGTGCCATAGGACCCCTTCGATTGGAGCTCTCTGTTTTACCTCCCATGGTATTAATTCCTGGTCTGTTGCGAGTAGCGGCAATTAATTGTATGTTGGGATTTGTAGTCTTAACTGCCTTACCGGGACTGGTGCTTTGGTATTACTATGTGACTCACAAAAGGAAAAGACGCACATTGTTTTTCCTTAGTTTGGCACTTTTCTCCCTTGCCTATATGTACTACCTTTTCCTTACTGAGATCGTTCCCAGAGGAGACGTAAGTAATCTGCAGCTGGTTACTGCGACGACAGGCATGATGTTGACGCTTATCTCCCTTGTGCGCACCAAGCAGGGACCAGGCGTTGTCAAATCCCAATCATTAGCTCTGGGAATCAACAGTAGCTCTACAACCAATCAGAGCACAAACTTACCCAGAGACTCCACCCCCTGCAATGGAATCAGCCAGTCAATGGGGGAGAAGGAAGGAAAGAAGAAGTTATGCCCTGTGTGCCAACTGGTGCGCCCACCAAGGGCTGGACACTGCAGGATCTGTGGGGCATGTGTCCTTCGAATGGACCACCACTGTGTTTGGATAAACAGCTGTGTAGGCCAAGCCAATCACAGGCAGTTCATTTTGACGCTCCTTCTCTTCCTGCTGACATCCTTCTACGGGATCAGTTTGGTGTTATGGAGTATATGTCCACGACAGAGTCTATTCACAGCTATGTTATACTGTCCCGGAGTCTACAGCCAATACAGCGTTATCATAACAGCCGGTCTGCTCCACCTGTTCATCATTCAGATTATCAATGTCAGTTACAACGTAACAGAACGCGAAGCTCAAATTGCTTTGCGCAACAAAACTGGCAGACGGCGCTTTTGTGGCCTGGTTGTGGAGACTGGTGTCTATTCACGAGGCTTCCTCCAGAACTGGATTCAGTTCCTCACAATGAACACGGATGAGAACGAATCCACTTTCACCTTCACAGACATGGTATGACACAAGGGACTACAGGCATGATGATCCTGGGTAGTATTTAAGCCATAATGATGTGATATGTTAAACATAACTTTGGTGGTGGTGTTTTTAGGCCTAAAATGTTGGTTGACACATTTACCTTGTTTGCATCAGGCAGAACGGTAGTATTTTTAATTATGAATGGTATGGAACTGGCAAGCAGGAACTTTTTAGGCAGACAGTTTAAATTGATGAAAACATATTTAATTCCTGTGGTTTTTTATTATTATTCCAGTTGTCATGTACACTGATGAGCCAAAATATTATAACCAGTCACAGGTGAAGCAAATATCATTGATCATCTCATAACAAGGCCACATATTAGGGTCTGGGTAGATTAGATGGTAAGTAAACAATCAATTCTCGTAGTCAAGGTGTTGGATGCAGAAAAAAATGGACAGGAATTAAGATCTTAGCGACTTTGATAAGGGCCAAATTGTTATGGCAAGGCGACCAGGTCAGAGTATCTCAGAAACAGCAAGGCATGTGGGTTGCTCCTGGTCAGAATTTACCAACAGTGGTCCGAGGAGGGGCAAACCATAAACCGGAGACAGGGCTCCCAAGGTTCATCGATGGACGAGGTTATGGGAGGAATGTGTCACAACATACAGTGTATCGCACTCTGCTACGTATGGGGCTGCGTAGCCGCAGACCAATCAGAGTGTCTATGATGACCGCTGTCCACCGTCAAAGGCGCCTACAATGGGCACGCTAGCATCCACTGGACCTTGGAGCAGCGGAAGAAGGTCGTCTGGTCCCATAAGTCCCATTTTCTTTTACATCACATGGATGGCCACGTACATGTGCGCCATTTACCTGTGGAAGTGATGGCACAATGACGTACTGTGGGATGACGACGAGCCAGTGGAGAGAGTGTGATGCTTTGAGCAATGTTCTGGGAAACCCTGGGTCCGGCCATTCATGTGGACGGCAATTTGACACGTGCCACCTACTTAAAGATTGTTGCAGACCAGGTACACCCCTTCATGATAATGGTGTTCCCTGGTGGATGTGGACTCTTTCAGCAGGATAATGCACTTTGCCACACTGCATACATTGTTCAGGAATGGTTTGAGGAACATGATGGAGAGTTCAAAATGTTGCCCCAGCCTCCAAATCCCCCACACTGTAAAAA

Function

symbol description
zdhhc23a Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC23 (zinc finger DHHC-type palmitoyltransferase 23).

NR:

description
Probable palmitoyltransferase ZDHHC23

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02355753_02358594.mRNA True 2929 mRNA 0.44 4 2355159 2359747

Neighbor

gene id symbol gene type direction distance location
CI01000339_02332203_02335402 ATP6V1A coding upstream 19757 2331610 ~ 2335402 (+)
CI01000339_02283051_02288143 MPDU1A coding upstream 66894 2282897 ~ 2288265 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding upstream 86411 2263831 ~ 2268748 (+)
CI01000339_02250288_02256537 NA coding upstream 98265 2249794 ~ 2256894 (+)
CI01000339_02221790_02222160 NA coding upstream 132414 2221790 ~ 2222745 (+)
CI01000339_02362904_02366296 NA coding downstream 2937 2362684 ~ 2366500 (+)
CI01000339_02369904_02370487 NA coding downstream 9572 2369319 ~ 2371316 (+)
CI01000339_02520632_02526538 DGCR8 coding downstream 159651 2519398 ~ 2526904 (+)
CI01000339_02534217_02550941 ATP6V0A2B, ATP6V0A2 coding downstream 174470 2534217 ~ 2551224 (+)
CI01000339_02724520_02726734 NA coding downstream 364773 2724520 ~ 2727177 (+)
G481771 NA non-coding upstream 30753 2316933 ~ 2324406 (+)
G481760 NA non-coding upstream 41619 2304061 ~ 2313540 (+)
G481780 NA non-coding upstream 93294 2259215 ~ 2261865 (+)
G481784 NA non-coding upstream 116450 2232241 ~ 2238709 (+)
G481810 NA non-coding upstream 125403 2229478 ~ 2229756 (+)
G481860 NA non-coding downstream 72437 2432184 ~ 2432460 (+)
G481851 NA non-coding downstream 149602 2509349 ~ 2511174 (+)
G481855 NA non-coding downstream 193176 2552923 ~ 2555109 (+)
G481899 NA non-coding downstream 285053 2644800 ~ 2652322 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 156350 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 777456 1571624 ~ 1577706 (+)
G481321 NA other upstream 1064426 1289321 ~ 1290733 (+)
G480761 NA other upstream 1714782 634414 ~ 643423 (+)
G480663 NA other upstream 2177176 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 461013 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 728046 3088110 ~ 3091633 (+)
G483672 NA other downstream 2867576 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3240714 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3682070 6041817 ~ 6044034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location