Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000339_02520632_02526538 |
| gene name | DGCR8 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000339 |
| NCBI id | null |
| chromosome length | 8057057 |
| location | 2519398 ~ 2526904 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| dgcr8 | Predicted to enable double-stranded RNA binding activity and primary miRNA binding activity. Predicted to be involved in primary miRNA processing. Predicted to be part of microprocessor complex. Orthologous to human DGCR8 (DGCR8 microprocessor complex subunit). |
| id | description |
|---|---|
| K18419 | DCGR8; microprocessor complex subunit DGCR8 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000339_02520632_02526538.mRNA | True | 3934 | mRNA | 0.44 | 13 | 2519398 | 2526904 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000339_02369904_02370487 | NA | coding | upstream | 148813 | 2369319 ~ 2371316 (+) |
| CI01000339_02362904_02366296 | NA | coding | upstream | 152898 | 2362684 ~ 2366500 (+) |
| CI01000339_02355753_02358594 | ZDHHC23A | coding | upstream | 159651 | 2355159 ~ 2359747 (+) |
| CI01000339_02332203_02335402 | ATP6V1A | coding | upstream | 183996 | 2331610 ~ 2335402 (+) |
| CI01000339_02283051_02288143 | MPDU1A | coding | upstream | 231133 | 2282897 ~ 2288265 (+) |
| CI01000339_02534217_02550941 | ATP6V0A2B, ATP6V0A2 | coding | downstream | 7313 | 2534217 ~ 2551224 (+) |
| CI01000339_02724520_02726734 | NA | coding | downstream | 197616 | 2724520 ~ 2727177 (+) |
| CI01000339_02821530_02821886 | MRPL41 | coding | downstream | 293672 | 2820576 ~ 2823479 (+) |
| CI01000339_02827191_02829073 | NA | coding | downstream | 300287 | 2827191 ~ 2829258 (+) |
| CI01000339_02881178_02904181 | NA | coding | downstream | 353038 | 2879942 ~ 2905073 (+) |
| G481851 | NA | non-coding | upstream | 8224 | 2509349 ~ 2511174 (+) |
| G481860 | NA | non-coding | upstream | 86938 | 2432184 ~ 2432460 (+) |
| G481771 | NA | non-coding | upstream | 194992 | 2316933 ~ 2324406 (+) |
| G481760 | NA | non-coding | upstream | 205858 | 2304061 ~ 2313540 (+) |
| G481855 | NA | non-coding | downstream | 26019 | 2552923 ~ 2555109 (+) |
| G481899 | NA | non-coding | downstream | 117896 | 2644800 ~ 2652322 (+) |
| G481898 | NA | non-coding | downstream | 190846 | 2717750 ~ 2719934 (+) |
| G482004 | NA | non-coding | downstream | 312951 | 2839855 ~ 2840668 (+) |
| G482035 | NA | non-coding | downstream | 374762 | 2901666 ~ 2901935 (+) |
| CI01000339_02196706_02198050 | GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP | other | upstream | 320589 | 2196307 ~ 2198809 (+) |
| CI01000339_01571624_01576903 | NA | other | upstream | 941695 | 1571624 ~ 1577706 (+) |
| G481321 | NA | other | upstream | 1228665 | 1289321 ~ 1290733 (+) |
| G480761 | NA | other | upstream | 1879021 | 634414 ~ 643423 (+) |
| G480663 | NA | other | upstream | 2341415 | 177668 ~ 177983 (+) |
| CI01000339_03088452_03091633 | NA | other | downstream | 560889 | 3088110 ~ 3091633 (+) |
| G483672 | NA | other | downstream | 2700419 | 5227323 ~ 5239784 (+) |
| CI01000339_05599544_05600935 | TIMM8B.S, TIMM8B | other | downstream | 3073557 | 5599544 ~ 5602261 (+) |
| CI01000339_06041909_06043927 | ATP5L | other | downstream | 3514913 | 6041817 ~ 6044034 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00018637 | NA | coding | CM030135.1 | CM030135.1 | 16280833 ~ 16286663 (+) |
