CI01000339_02534217_02550941 (ATP6V0A2B, ATP6V0A2)


Basic Information

Item Value
gene id CI01000339_02534217_02550941
gene name ATP6V0A2B, ATP6V0A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2534217 ~ 2551224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02534217_02550941.mRNA
ATGGGTTCGTTGTTTCGGAGTGAGGAGATGTGTCTGGCCCAGCTCTTTCTGCAGTCCGGATCCGCTTACGACTGCATCAGTGAACTTGGCGAACTCGGACTGGTGGAGTTCAGAGACCTCAACCCAAGTGTGAACTCTTTTCAGCGCAAGTTTGTCAATGAAATCAAGAAATGTGAAGAGATGGAGAGGATTCTAGGATATCTTTTGAGGGAAATTAAAAAAGAAGACATCCCACTGCCAGAAGGGGAGGTGAACCCAGCTGCACCATTACCCAAACATGTGATGGTCATAATGGAACAGCTTCAGAGACTGGAACTAGAGCTGAGTGAGGTCACCAGAAACAAGGAGAAACTCCAGAAGAACCTTCTAGAACTGACTGAGTACACGCATATGCTGCGCATCACACGCAACTTTGTGCACCACAGTGTAGAGAGGGAGTCGCCGCAGGTCCAGTATGAAGAGTTTCCGTTTCTAGAGAAAGAACCTGTGATGGACTACACCAGCATGCAGAGGCTCGGAGCCAAGCTTGGGTTCATTTCTGGGCTCATCCAGAGTGTGAAAATCGAGGCATTTGAGCGAATGCTCTGGAGAGTGTGTAAGGGCTACACCATCCTCAGCTACTCTGAAGTAGATCAGCTTCTGGGCGACCCTGATTCGGGGGAGCCAACCAGGAGTGTGGTGTTCCTTATCTCCTACTGGGGAGATCAGATTGGACAGAAAGTTAAGAAGATATGTGACTGCTACCACTGTCACCTGTACCCGTACCCCAACAGTAATGAGGAGAGGACAGATGTGGTGGAGGGGCTCCGCACACGCATTCAGGACTTGCACACGGTTCTTCACCGGACTGAGGATTACCTGAGGCAGGTTTTGATCAAGGCCTCAGAGTCTGTGTATATTTGGGTAATCCAGGTTAAGAAAATGAAGGCCATATACCACATCCTCAACCTCTGCAGTTTTGATGTCACAAACAAGTGCCTCATAGCAGAGGTGTGGTGTCCTGTAAATGATCTGCCTGCTCTTCGGAGAGCGCTAGAGGATGGATCGAGGAAGAGTGGAGCCACAGTTCCCTCATTTGTCAATCGTATCCCAAGCAATGACACTCCACCGACCCTCATACGCACCAACAAGTTTACCTCAGGCTTTCAGAATATAGTGGATGCCTATGGTGTGGGCAGCTACAGAGAGGTCAACCCAGCTCCATATACAATTATTACCTTTCCCTTCCTGTTTGCTGTGATGTTTGGAGACCTCGGGCACGGCATCATCATGGCACTGTTTGCTCTGTGGATGGTTATCTATGAGAATGACCGCAAACTGAAGAAAACCAGGAATGAGATCTGGAACATTTTTTTCGAGGGCCGTTACATCATCCTGTTGATGGGCATATTTTCAGTCTACACCGGATTAATATACAATGACTGCTTCTCCAAATCACTCAACCTGTTCGGCTCAGGGTGGAACGTCAGCGCCATGTTCAAGCATGGAGACTGGACTTGGAGCACAGTCCACTCAAATGGCTTCCTTGCACTGAATCCAAATGTCACAGGAGTCTTTAAAGGGCCCTATCCTCTGGGGATAGACCCGATCTGGAACCTGGCATCAAACCGTCTCACCTTCCTGAACTCCTATAAGATGAAGATGTCTGTGATTGTAGGAATAATCCACATGACTTTTGGAGTCGTCCTTGGCGTTTTCAATCACTTGCACTTCAGACGGACATATAATCTGTACCTGATATTTATTCCTGAGCTGCTCTTCCTGCTGTGTCTCTTCGGCTATCTGGTCTTCATGATCATCTATAAGTGGCTGTTTTTCACAGTTCGAGACTCTCAGACAGCCCCCAGCATCCTCATCCACTTCATCAACATGTTCCTGATGCAGGGGGACTCTGACCAACCCCTTTTCCCAGGACAGACTGGGCTTCAAGTGTTTCTGGTGATTGTGGCCGTGTTCTCTGTGCCTGTGTTATTATTGGGCAAACCTCTCTACCTCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGGGGGTATCAGCGTGTACGACGGAACAGTGAGGAGGAGCTCTCTCTCATGCAAGCTCATGATATGGAGGAAGGCAGCAGCCTGGACAGCCACTCCTCCAGCTCTGACAGCCAATCAGAGGAGCTTGATTTTGCAGATCTGTTCCTCAATCAGTCCATCCACACTATAGAGTACTGTCTGGGCTGCATTTCTAACACTGCGTCTTACCTCCGCCTGTGGGCTCTCAGCCTGGCACATGCCCAGCTCTCTGAAGTATTGTGGGCAATGGTGATGCGGGATGGCCTACGTGTGAACACTAGTGTGGGCGTTGTGCTCCTGGTGCCTGCTTTTGGTCTGTTTGCTGTCCTCACTGTGTCCATCCTGCTGGTGATGGAGGGACTTTCAGCCTTCCTTCATGCTCTCAGACTCCACTGGTCAGTACAACCCCTCAAATATACACCACTATCAGCAAAACCATGTATTATTGTAGTCCATCACGCTCAGGCGAGATTGGACATCAGTATTCAGCAATCACATCAAAGGCAAAGCGAGTTCAGGGCAGAGAGTTGTGAAACTGCCAAAGTCATTTAATTTTAATTGTATCATAAATGGAGATGTTTTAGTGTTTTAACTGTCCTAGCTCTGTTCAATTACTCTATTCTGACTCTTAAGAATAGTCTTATTTTAACTCAATTTAATGTGACACTTTGGTGTGTGGATTGTGAGCCACTGAATTCATTCCATTTTTTTTTTTCTTTCGGATTTATTAACCATACTCATTTTGATACCTATCTATAATTTGAAGATTCTGTGCATTGCTTAAGTAACTTACATTCCATATTTTGCATAGGAGATGAATATTTAATATTACACA

Function

symbol description
atp6v0a2b Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).
atp6v0a2 Predicted to enable ATPase binding activity. Involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Located in lysosomal membrane. Implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02534217_02550941.mRNA True 2887 mRNA 0.47 20 2534217 2551224

Neighbor

gene id symbol gene type direction distance location
CI01000339_02520632_02526538 DGCR8 coding upstream 7313 2519398 ~ 2526904 (+)
CI01000339_02369904_02370487 NA coding upstream 163632 2369319 ~ 2371316 (+)
CI01000339_02362904_02366296 NA coding upstream 167717 2362684 ~ 2366500 (+)
CI01000339_02355753_02358594 ZDHHC23A coding upstream 174470 2355159 ~ 2359747 (+)
CI01000339_02332203_02335402 ATP6V1A coding upstream 198815 2331610 ~ 2335402 (+)
CI01000339_02724520_02726734 NA coding downstream 173296 2724520 ~ 2727177 (+)
CI01000339_02821530_02821886 MRPL41 coding downstream 269352 2820576 ~ 2823479 (+)
CI01000339_02827191_02829073 NA coding downstream 275967 2827191 ~ 2829258 (+)
CI01000339_02881178_02904181 NA coding downstream 328718 2879942 ~ 2905073 (+)
CI01000339_02906594_02907565 FUT7 coding downstream 355066 2906290 ~ 2907736 (+)
G481851 NA non-coding upstream 23043 2509349 ~ 2511174 (+)
G481860 NA non-coding upstream 101757 2432184 ~ 2432460 (+)
G481771 NA non-coding upstream 209811 2316933 ~ 2324406 (+)
G481760 NA non-coding upstream 220677 2304061 ~ 2313540 (+)
G481855 NA non-coding downstream 1699 2552923 ~ 2555109 (+)
G481899 NA non-coding downstream 93576 2644800 ~ 2652322 (+)
G481898 NA non-coding downstream 166526 2717750 ~ 2719934 (+)
G482004 NA non-coding downstream 288631 2839855 ~ 2840668 (+)
G482035 NA non-coding downstream 350442 2901666 ~ 2901935 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 335408 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 956514 1571624 ~ 1577706 (+)
G481321 NA other upstream 1243484 1289321 ~ 1290733 (+)
G480761 NA other upstream 1893840 634414 ~ 643423 (+)
G480663 NA other upstream 2356234 177668 ~ 177983 (+)
CI01000339_03088452_03091633 NA other downstream 536569 3088110 ~ 3091633 (+)
G483672 NA other downstream 2676099 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3049237 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3490593 6041817 ~ 6044034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding CM030122.1 CM030122.1 34214899 ~ 34263010 (-)