CI01000339_02827191_02829073


Basic Information

Item Value
gene id CI01000339_02827191_02829073
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2827191 ~ 2829258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02827191_02829073.mRNA
ATGGATCAGAATAACTCCGAGTCCAAATCTGTCCTCTGCACATTGCTGGATAAAAACGATCAGTCCAAGTATGTGTTTTTTACGCAAAAGCGATCAGCAGGAGACATAAACATAGGATTTACCAATGGTGAAGATGTTTGGAAAACTCATCTTTCAGAGGAGATTCTGTCCCAGCTTTTTAAGAAGTTTGCATTAAAGTCCACAGAGGATTATACCTTCAAGCTCAAATGTGCATGTAAGGCAGGCAGAGCATTTGTGAAGCTGCAGGAGGACAGTGCTGTGCTGCATTTAGGAGCTGAACCTACAGACCTCAGTCTGTCTCTTTCAAAACTCACCGACTCCGAGGGAAGGACAGAAGTCAAGGACCTGCTTTTTAAAATGGCTGACAGCCTGCAACAGCTAGAAAGTGCTTCATCTTCTTTTAGTCCAGTCAAGAGTGCTCAGAAGAAGAGTTCTGAATATGAACCTAGAAATCAGCACAAGGGTCCTATAGTAGCAGTTAGAAAACGTCTTCCTGGGGATTCTCTCATCAACCCAGGAACAAAAAGAAAGAAACCTGCAACAGGTGTGGCCTTTGATGATGGAGATGATGAATGATGTCAACGTGACCTCTGAAACGTGACCTTTTATTAAACATGAATTGTCCGTTTTTAACTAACTCAACACTATCAGTTTTTAAAATATAACTTGCATTGCAATTACACCATGAACTGTTTTAAGTCATCATGCATCTATTTAAGGTTTTATATTTTCTTTAAATGTTTTCCCTTTTTAAATTGCTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02827191_02829073.mRNA True 782 mRNA 0.40 7 2827191 2829258

Neighbor

gene id symbol gene type direction distance location
CI01000339_02821530_02821886 MRPL41 coding upstream 5215 2820576 ~ 2823479 (+)
CI01000339_02724520_02726734 NA coding upstream 100014 2724520 ~ 2727177 (+)
CI01000339_02534217_02550941 ATP6V0A2B, ATP6V0A2 coding upstream 275967 2534217 ~ 2551224 (+)
CI01000339_02520632_02526538 DGCR8 coding upstream 300287 2519398 ~ 2526904 (+)
CI01000339_02369904_02370487 NA coding upstream 456606 2369319 ~ 2371316 (+)
CI01000339_02881178_02904181 NA coding downstream 50684 2879942 ~ 2905073 (+)
CI01000339_02906594_02907565 FUT7 coding downstream 77032 2906290 ~ 2907736 (+)
CI01000339_02922115_02925261 CARNMT1 coding downstream 92857 2922115 ~ 2925304 (+)
CI01000339_02926088_02926877 NA coding downstream 96695 2925953 ~ 2926999 (+)
CI01000339_02930318_02952950 TRPM6 coding downstream 101060 2930318 ~ 2954199 (+)
G481898 NA non-coding upstream 107257 2717750 ~ 2719934 (+)
G481899 NA non-coding upstream 174869 2644800 ~ 2652322 (+)
G481855 NA non-coding upstream 272082 2552923 ~ 2555109 (+)
G481851 NA non-coding upstream 316017 2509349 ~ 2511174 (+)
G481860 NA non-coding upstream 394731 2432184 ~ 2432460 (+)
G482004 NA non-coding downstream 10597 2839855 ~ 2840668 (+)
G482035 NA non-coding downstream 72408 2901666 ~ 2901935 (+)
G482048 NA non-coding downstream 120364 2949622 ~ 2950082 (+)
G482069 NA non-coding downstream 251135 3080393 ~ 3083969 (+)
G482139 NA non-coding downstream 254909 3084167 ~ 3084374 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 628382 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1249488 1571624 ~ 1577706 (+)
G481321 NA other upstream 1536458 1289321 ~ 1290733 (+)
G480761 NA other upstream 2186814 634414 ~ 643423 (+)
CI01000339_03088452_03091633 NA other downstream 258535 3088110 ~ 3091633 (+)
G483672 NA other downstream 2398065 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2771203 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3212559 6041817 ~ 6044034 (+)
G484139 NA other downstream 4117128 6946386 ~ 6966146 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location