CI01000339_02881178_02904181


Basic Information

Item Value
gene id CI01000339_02881178_02904181
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2879942 ~ 2905073 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02881178_02904181.mRNA
GTATATAAATACTGTATATGTGAAAATGCATTGGCCCTGTCTAGAGGCCAGATACACAGATGGCAGCATTACAGAAAACGGCTCGCCTAATTTAAAGGTTAATTAACCTCTGTGTTCTTCCAGTTGCTAATTCATCTCAGTGTAATGACTGAGAGAGTCATTACAGATGAACCCATTAACTATAAAAAGATTCTGAAAGCAGGAGTCAGAAAATAGGTGGAATGAGACAAGACATTTACATGCATGTGTTTAAAATCGCATGCAATCTTCTCTCTGTGGGATCATTGTGCATGTGAATTAAATAGAGTGGGAATCAAACTGAGTGAAAAAGAGAGATAGAGATTAAGAGAGAAAGAGAGCGAGAGAGGAGGAAGGGTTAAGTACGGGTCAGTGGTGGGTGGTATCTTATATATGTGTTGACTAGCTTTACAACAGCTTCCCGTCTTTTAACACGACCACAAAGCAAGATAGAACACGTAATGCAAATAACTGATAACACATATGCAAGACGCATTTCCTGTACAATTTTTTTTTGTAGGGATCTGCAAGCATAGTTTGTATAAACCCAGTAATATTTAATATGATATTTCTACAAGTATACCAAGGACGAGACATCACTAATAAAATCACACCAAATTCCACTCTTAAGAAACAAAGTGTCCTAACCAAAATAAAATTAAACCGCGAATACACTTGACATTCTGGTAAAACTGGTAAAAGTAATCATTAGCAAATCTCACTAATCCACTTTTCATACTGTACATTACAATGTTGTGATGCCTAAATTCGTTTGTAGCATTTAAATAATCAACAAATATATTTAAAATTGTAATTATTGGTATGGCCCAGAATTGTAACATTGGTCCATCTCTAATATTAAAAATTGGCATGAAACGTGACGTTTACCCAAGTGAAACAGCTTCTCGAAAAAATTAGGAACTAGGAAAAAGGGAGTGATGTACTGACACAACTAATAAAATTAAATCAAATCCCACCCACAAGAAACAACATGTCCTAACCAAAACAAAATTGAAACAAAATGTACTTTGTAAGCTTGACACTGGCACAATCACCCTTTAGGTGTCCACTGTAAATGCATTACTGTACATGAGCATTTCTTTTTAATTTCATAAATTGAATTGACTTCTGTGTAATCATATCTGCTGTATTTAGACTTGTACGCTCACACACATTCACACACACATACTAGTATACTTCAACACATTGTGAAGGAAAATGGACAGAGAAAGACAGCATGAAACATTGAAAAAGAGAATAAAAAATGAGGCAGCCATTCATGAAAGTCCAGTGGGCATTCAGAGTCTTTTGTACTTAAACAGGTGTAAGGCTGAGAAAGGGCAAAGGGAAAAACAGAACTCGACTGTGCCACTTCCTTTCAGGGAGAAAGCGATAAGGGCAGTTCAATCAAATTTAACTAAGAAAAAGGAAGGGATAAAAAGCAAACAAGATGGAGAAAAACAGACATTAAAAGCAGGGAATGTGTCGTATTCGTTATGTTCATTGTTTCTGCGTTCTGAGTCTTGTTTGGTGATGACACAATCATGCCAGGATGAAGAAGAGGGAGGTGACTTTGAGAGAAAACCAAGCAATTTGGATGCTAAAAGAAAAGAGGAGCTCAGTTAGAGCTATGGCTCAAACATTGGGCATAACCAAATCAGAAATTTGTAATGTTCTGAAAAAGAAAGAAACCACTGGCGACTTCAGCAACCAACAATGACCAGGTCGGCAGAGAAAAACAGCAGTTGATGACAGACAAATCATAAAAGCTGTGAAAAAGAACCCTAAAATAAGTGTCAGTGAAATCACCAACAACCTCCAGAAAGCTGGGGTGATGGTCTCACAATCTACTGTTCGCAGGAGACAGCAGAATTACAGAGGCTACATGCAAGATGCAAACCTCTAATCAGCACGACAAATAGAAAAGTCAGATTAGAGTTTGCAAAAAAGCACAGAGATGAGCCAGTAGATGGAGAGACGAGACAAAGATTAACCTTTATCAAAGTGATGGGAAAGCAAAAGTGTGGAGGAAAAAAAGAAATTGCACATGATTCTAAGCATACAGCCTCATCTGAAAAGCACGGTGGAGGTAGTGTCATGGCATGGACATGCATGGCTGCCTCTGGAACAAGCTTACTCCTCTTTATTGATGACTTAATGTATGACGGTGGCAGCAGAATGAATTCGGAAGTATACAAAACCATATTGGCTACCAATGTTCAAGAAAAAACTGCCAGACTCATAGAGAAGTGCTTGATATTGCAACAGAATCAATTCAACAGGATCTGACATTTCAACAGATCATGACAAGTCATCAGTATGACTGACTATGACTGCACAAAGCTCTAAATGTTCAGTGTGGGTTAGAGAGCAGCTTGTGGTTTTCTTTCTCATCAGCACCACGGCACAACTGTAAAAAAGTAACTCTAAAATCTTTTGATCCACCCACAAAGTTTTTCTTTCACTATATGACAACAAATGCACAAATCATTTAAATGGCCAACTCACAAAATTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02881178_02904181.mRNA True 2536 mRNA 0.38 3 2879942 2905073

Neighbor

gene id symbol gene type direction distance location
CI01000339_02827191_02829073 NA coding upstream 50684 2827191 ~ 2829258 (+)
CI01000339_02821530_02821886 MRPL41 coding upstream 57966 2820576 ~ 2823479 (+)
CI01000339_02724520_02726734 NA coding upstream 152765 2724520 ~ 2727177 (+)
CI01000339_02534217_02550941 ATP6V0A2B, ATP6V0A2 coding upstream 328718 2534217 ~ 2551224 (+)
CI01000339_02520632_02526538 DGCR8 coding upstream 353038 2519398 ~ 2526904 (+)
CI01000339_02906594_02907565 FUT7 coding downstream 1217 2906290 ~ 2907736 (+)
CI01000339_02922115_02925261 CARNMT1 coding downstream 17042 2922115 ~ 2925304 (+)
CI01000339_02926088_02926877 NA coding downstream 20880 2925953 ~ 2926999 (+)
CI01000339_02930318_02952950 TRPM6 coding downstream 25245 2930318 ~ 2954199 (+)
CI01000339_03088452_03091633 NA coding downstream 183037 3088110 ~ 3091633 (+)
G482004 NA non-coding upstream 39274 2839855 ~ 2840668 (+)
G481898 NA non-coding upstream 160008 2717750 ~ 2719934 (+)
G481899 NA non-coding upstream 227620 2644800 ~ 2652322 (+)
G481855 NA non-coding upstream 324833 2552923 ~ 2555109 (+)
G481851 NA non-coding upstream 368768 2509349 ~ 2511174 (+)
G482048 NA non-coding downstream 44549 2949622 ~ 2950082 (+)
G482069 NA non-coding downstream 175320 3080393 ~ 3083969 (+)
G482139 NA non-coding downstream 179094 3084167 ~ 3084374 (+)
G482192 NA non-coding downstream 224578 3129651 ~ 3130283 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 681133 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1302239 1571624 ~ 1577706 (+)
G481321 NA other upstream 1589209 1289321 ~ 1290733 (+)
G480761 NA other upstream 2239565 634414 ~ 643423 (+)
G483672 NA other downstream 2322250 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2695388 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3136744 6041817 ~ 6044034 (+)
G484139 NA other downstream 4041313 6946386 ~ 6966146 (+)

Expression


Co-expression Network