CI01000339_02922115_02925261 (CARNMT1)


Basic Information

Item Value
gene id CI01000339_02922115_02925261
gene name CARNMT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2922115 ~ 2925304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02922115_02925261.mRNA
TGTACGGCAATGGCTGACGGCAAGGATGAAACAGTAGCAGCTTCCAAACCAGAGGTATTTTCCAACTATCGGGACAGGATTAAATGTTCACCAGAGGAAGAGGCGCAATTAGAGAGACAGCATTTCTGGAATGTCATAAACGCGTTTAAATACTACAGAATTCACGTTCATGAACGAGTGAATCGAGCCGAGCGGCAGTTCCGATGCCTTCCAGATCACCACCAGCAACTTTTGACAAACTTCTTGCCCAATCTGAGCAAGATCCGCTACTGTGTCGACCGAAACCAAGAGGTGCTGCAGGCCATAGTGAACAACTGCCTCGATATGTTTGAGAACATGGAATATGGACAGGATGGTGAGCCAAGGAAAGTACGGCCATCCTCAACTTTTGACATGGACAAGCTGAAGTCAACCATTAAGCAGTTTGTCCGTGACTGGAGTGAAGCAGGAAAGGCTGAAAGGGACAGCTGCTATAAACCTATTATAGATGAGATCCAGAGACTGTTTCCTCCTGAACAGTGTGATGTGTCCCAGGTCAGAGTGTTAGTGCCCGGGTCCGGTCTAGGTCGACTTGCATGGGAAATCGCTCGTCTGGGCTATTCGTGCCAAGGCAACGAGTGGAGTTTCTTCATGCTCTTCTCCTCTAATTTTGTTCTGAATAGGTGTGATGAGGAGAATGCTTTGACTCTGTATCCCTGGATTCATCAGTTCAGTAATAACAAAATGTCCTCAGATCAAACAAGACCCGTGTCCTTTCCTGATGTCAATCCACAGAGTCTTCCAGCAGACTCAGACTTCTCTATGGTTGCTGGAGACTTCCAGGAAGTATACAATGACCCTGAAATGTGGGATTGTGTTGCTACTTGTTTCTTCATTGACACTGCCCACAATGTTCTTGATTACATTGAAACCATCTGGACTATTCTAAAACCTGGTGGTGTCTGGATAAATTTGGGTCCACTACTTTACCACTATGAGAATATGGCTAATGAATTGTCCATTGAGCTGAGCTATGAGGACATAAAGGCTGTCCTTTTAAAATATGGATTTGTCCTGGAGTTTGAGAGACAGTCTGTTCCCAGCACATACACAGAGAACGATCGCTCCATGCTCAAGTACCTTTACGACTGTGTCTTTTTTATCGTACGAAAACCTGCAGAACAGTTGGTCAATGGAGATCAGACACCTAAAGATGATCAGATTGAGGATACTTTACAGACAAGAAACTCAACATGACGTTTAGAAGGCTGGATGAATTCACAGACAAATGGCCCAAATA

Function

symbol description
carnmt1 Predicted to enable carnosine N-methyltransferase activity. Predicted to be involved in carnosine metabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human CARNMT1 (carnosine N-methyltransferase 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K19787 CARNMT1; carnosine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02922115_02925261.mRNA True 1279 mRNA 0.45 8 2922115 2925304

Neighbor

gene id symbol gene type direction distance location
CI01000339_02906594_02907565 FUT7 coding upstream 14379 2906290 ~ 2907736 (+)
CI01000339_02881178_02904181 NA coding upstream 17042 2879942 ~ 2905073 (+)
CI01000339_02827191_02829073 NA coding upstream 92857 2827191 ~ 2829258 (+)
CI01000339_02821530_02821886 MRPL41 coding upstream 100139 2820576 ~ 2823479 (+)
CI01000339_02724520_02726734 NA coding upstream 194938 2724520 ~ 2727177 (+)
CI01000339_02926088_02926877 NA coding downstream 649 2925953 ~ 2926999 (+)
CI01000339_02930318_02952950 TRPM6 coding downstream 5014 2930318 ~ 2954199 (+)
CI01000339_03088452_03091633 NA coding downstream 162806 3088110 ~ 3091633 (+)
CI01000339_03092627_03099083 NA coding downstream 167323 3092627 ~ 3099210 (+)
CI01000339_03140715_03144128 ZFAND5A coding downstream 215233 3140537 ~ 3145379 (+)
G482035 NA non-coding upstream 20180 2901666 ~ 2901935 (+)
G482004 NA non-coding upstream 81447 2839855 ~ 2840668 (+)
G481898 NA non-coding upstream 202181 2717750 ~ 2719934 (+)
G481899 NA non-coding upstream 269793 2644800 ~ 2652322 (+)
G481855 NA non-coding upstream 367006 2552923 ~ 2555109 (+)
G482048 NA non-coding downstream 24318 2949622 ~ 2950082 (+)
G482069 NA non-coding downstream 155089 3080393 ~ 3083969 (+)
G482139 NA non-coding downstream 158863 3084167 ~ 3084374 (+)
G482192 NA non-coding downstream 204347 3129651 ~ 3130283 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 723306 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1344412 1571624 ~ 1577706 (+)
G481321 NA other upstream 1631382 1289321 ~ 1290733 (+)
G480761 NA other upstream 2281738 634414 ~ 643423 (+)
G483672 NA other downstream 2302019 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2675157 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3116513 6041817 ~ 6044034 (+)
G484139 NA other downstream 4021082 6946386 ~ 6966146 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030084 carnmt1 coding NC_007116.7 CM002889.2 25304499 ~ 25309549 (+)