CI01000339_03140715_03144128 (ZFAND5A)


Basic Information

Item Value
gene id CI01000339_03140715_03144128
gene name ZFAND5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 3140537 ~ 3145379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_03140715_03144128.mRNA
ATATAAAAGAATAAAACAAACAGTTTAACAGCTAGTCATAAAACAAAAACTTGCTGAGTGCACATTGAAAACAGTCATCTCCTACTCATTGCATGTGCATGTAAGTCAAACACAATGCTGTCATTATTAACAAGACCACTCCTGTTCTGTCTCCATTTTCTTTTGTGATATATTAGCAATGGCCCAAGAGACAAACCAGAGTCCTGTGCCTATACTGTGTACCACAGGCTGTGGTTTCTATGGCAACCCAAGGACCAATGGCATGTGCTCGGTGTGCTATAAGGAGCACCTGAACAGACAGCAAAGCAGTGATCGTAGTCCCATGAGCCCCCTGGCTGGCAGCCCCTCAGCAGAGGCCTCCGCTATACAGAGACTAGAAGCCAGCATAAACAAAGCAGAGCCCTCACCTGCACCCAGTGCAGATACCATGAGAGATAGTATTCCTTCAACCTCCTTACCGGTGACACAACAGATGACAGAAATGAGTATTTCTAGAGAGGAAAGGGCCCTGTCTCCTAAAGCTGAGGCTGTTGAACCAGTTATAACACAGCCCACCTCCTCCTACTCCCCCGTCGCTGTGACTCAGGGCAGCGATGAGGGCAAGAGCCCAGACTCCATCAAACCTAAGAAAAATAGATGCTTTACCTGCCGTAAGCGAGTCGGCCTAACAGGTTTTGACTGTCGATGTGGTAATCTGTTCTGTGGAATTCACCGGTACTCAGACAAGCACAACTGCACATATGATTACAAGGCGGAAGCCGCTGCTAAGATCCGTAAGGAGAATCCAGTAGTGGTGGCCGATAAGATCCAGAGAATATAAGCTTTTCCCTCTTTCTCCAAGAACACTGGTGGATAAAATGGACGACTTGAAAAACGGACTTGTGTTTTTCGATCACCTTAAGAAGAAAACGAGAGAACTGTACCGTCTGAAGCTCATGCATGAACGATCTGACAGATTTTGGTTTTCTAATAGGTATTAATTTCTTTCCGTTTTGTTTTTTTTCCTCTCCTCTCTGTGGTGTTTTATGCTAGTTATTCTCGCATATTCTTTTTTCTAAAGCATAGGACACCTTTCAGGAAATTTTAGCTGTTATTATTGTTTTGTTTTTTTTGCTTGTTCCCGCCCTCACGCAATGGGAGTGGCAGATACTCTGTGCCAAAACGTGGCCGTGTAGTTTCTGAGTAATTAGTGTTTAGCCTTTGTCTTATCATGAAAGACGCTGGATTTTCAAGAGATGTGTCAAAGCTCTACCTGATGGTGTGTGCTGCATGTGCTGGTCTGCTAAACTGCAGTGTGTCATTACAGTCTGTTCTAACAAAATCTATTGGAATGTGGGGCCGCCCAGTCGTCAAGGCCATTTATTTACCATTATTTTAGAATGTGAACTTGCTACTGTGACATCATACCTTTTCTTTGTTTTAGAATGAAAGATTGAGATTCATCAGAAGTAATTTGTTTTGTTTTTTTCAGCTGTGTCAACTCTATTCCCACATTCTAGAACCAATAACCTCCAATCTGTCACAACTGCGCTTTAGAGTTTCAGTGGTCTGGGAATTTATATGAGTTTTATTTTTGTTAATTTTGTGTGAAAATGACATAGACTCTTTAATAAGACTGAGGTGGTGCAGTCGGTTTCCGTGTGAGTGTATTTGTGCGCATGGTGGGGAAATTTGCGCACAAGCCCTTCTTCCTGTTGTCAAAGTGAGATGAGCTAAACCTCCTTAGACAGTGAATTTGCAACACCGCAATAGTATAGGCATAAAGTCAGACCTGAGTCTGTGAAACATTGTTCTTTTTGTTTTGAAATGCATCCACAATGCACCTGTCATTTTTGTGTGTCTGCATATGTTAATCTTTTGCGAGTGCATGTGTTGTGTGTGTGTATATAAACGTCTTTTCTTCTGTAGGGAGTGAGGTTTCCTTAAAAAAAAAAAAGATGTATCTGTTGAGAGTATGTTGAATTTCAGCCTTTAGTTATATGCAAATTTGTATGAAAAAAAACAAACATTACTATGTTCATATTTATGTATTGCATTTAATCCTTTTACCTGGCATTAAAAAGTATTGTAA

Function

symbol description
zfand5a Predicted to enable DNA binding activity and zinc ion binding activity. Is expressed in several structures, including blastomere; mesenchyme; mesoderm; notochord; and tail bud. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_03140715_03144128.mRNA True 2071 mRNA 0.41 5 3140537 3145379

Neighbor

gene id symbol gene type direction distance location
CI01000339_03092627_03099083 NA coding upstream 41327 3092627 ~ 3099210 (+)
CI01000339_03088452_03091633 NA coding upstream 48904 3088110 ~ 3091633 (+)
CI01000339_02930318_02952950 TRPM6 coding upstream 186338 2930318 ~ 2954199 (+)
CI01000339_02926088_02926877 NA coding upstream 213538 2925953 ~ 2926999 (+)
CI01000339_02922115_02925261 CARNMT1 coding upstream 215233 2922115 ~ 2925304 (+)
CI01000339_03174100_03188909 ABHD17B.S, ABHD17B, F108B coding downstream 28721 3174100 ~ 3189475 (+)
CI01000339_03192684_03218127 TMEM2 coding downstream 47305 3192684 ~ 3218667 (+)
CI01000339_03310580_03370796 TRPM3 coding downstream 164566 3309945 ~ 3371103 (+)
CI01000339_03376850_03378630 KLF9 coding downstream 230675 3376054 ~ 3379163 (+)
CI01000339_03416422_03423058 BCO2L coding downstream 271043 3416422 ~ 3423181 (+)
G482076 NA non-coding upstream 2732 3137319 ~ 3137805 (+)
G482193 NA non-coding upstream 7964 3132312 ~ 3132573 (+)
G482192 NA non-coding upstream 10254 3129651 ~ 3130283 (+)
G482139 NA non-coding upstream 56163 3084167 ~ 3084374 (+)
G482072 NA non-coding downstream 342 3145721 ~ 3146494 (+)
G482194 NA non-coding downstream 1907 3147286 ~ 3147667 (+)
G482195 NA non-coding downstream 4531 3149910 ~ 3150184 (+)
G482198 NA non-coding downstream 17913 3163292 ~ 3163647 (+)
G482199 NA non-coding downstream 18688 3164067 ~ 3164294 (+)
CI01000339_02821530_02821886 MRPL41 other upstream 316644 2820576 ~ 2823479 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 941728 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1562834 1571624 ~ 1577706 (+)
G481321 NA other upstream 1849804 1289321 ~ 1290733 (+)
G483672 NA other downstream 2081944 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2455082 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 2896438 6041817 ~ 6044034 (+)
G484139 NA other downstream 3801007 6946386 ~ 6966146 (+)
G484134 NA other downstream 3801414 6946793 ~ 6947480 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location