CI01000339_05836831_05840321


Basic Information

Item Value
gene id CI01000339_05836831_05840321
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5836831 ~ 5840733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_05836831_05840321.mRNA
AGTATTCCAAGAGAGTATACCAAGGTGTCAGAGTCAAGCACACGGTCAAAGATCTTCTTGCAGAGAAGCGATTACGACAAACAAATGCACCCCGATTCAGTACGAGCAGCAGTTCCTCTCAGCCAGCTTTTGTGCCAATGCCTGGGTCACACGTGCTTCCTGGTTACTACAGTATGCGAAGATCCTTCCTCCCAGACTCAGAGCTCTGCCATCCCATGAAGCAGTACTCATCACCAGACACTTACTCTTCAGCATTGGGAAGCAAGGCCTTTTCGTACGACCACCCCTCCACTTACCCTTCCTTCATTGACAGCTACTACACTCCTGATTCATATGGTGATTACAGAGGGCCAACGTCTTATACCACCAGTGGAGGGTCACTGTTTCCACCATCTACACTACCAACACTACTACCAGCTCTGTCTGGAGAGTCATCATCACATTTGCTCTTGGTATTCACACTTCCTACTGCTGATATTATTTGGGTCAATGATAGAGACCCTTGGGATCAGCCGTCAGAGGACCCAGTCAGTCAGTCAGAAGTCATATGTCCTGAGGGTCCAGCCCCTGTGGCAGACTCACCATCTCTGGGAGGGCCGGACTCTGGCGGCTCCTCTCCATACCGTCTATCCTCGGGGCGCAGCGGGAGCTCCATCCCACCCAGCTCTCAGCCTTATACTCTACAACCCCTGGAAGATGTCTCGTACCCAGCAGCATCCTACACCTCTGCCTCCAGCTACTCCTGCCCACAGTACATGGTGACACCTGGAGATCTGGCTGTGGTGAAGATGACAGCCGTCACCTCAGAGGAGGCTAGTGGTGGAGTGGTGTCTCTCAGTGACACTACATCCTGGGCTAAAGATGATGGAACTGGCTCCTGGTTGTCCTATGAGACAAGGAGGGCTTTTTAAGAGGCTTAAATGACAATACAAACACTGTGGACTAATCATTTGCAATTACACAGCCTCTCTATTCTTGTACAGAAGGAGATTATATACATCCATCATAAAGATGACCTTCTCAAGAAATGCTGATCACGATACAACACAATTTTTAAACTGTTGATATTGCGTAAGGATACAACAAAAATATGTGCTGATAGTTTAGTTAATTCAGGTTTTCATTATGCATTTACATGTCCAAGCGTTCTAGAATGAATTAGAAGCAATGCTCGCTTTTTTCCCTCTTTCATACATTTTTAATTGTAACATTAATCCTCAAACGAAAAGTTTTGACTGGTCAAGAATATAACTAGCGAATAATACCAAAGAACACTTTAAGACAACAATGTTGGACTTTTGTCAGGAATGCCAATATATAAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_05836831_05840321.mRNA True 1323 mRNA 0.46 4 5836831 5840733

Neighbor

gene id symbol gene type direction distance location
CI01000339_05655376_05675186 ADAMTS15A coding upstream 161248 5655179 ~ 5675583 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B coding upstream 235615 5599544 ~ 5602261 (+)
CI01000339_05544723_05561118 NA coding upstream 274862 5544318 ~ 5561969 (+)
CI01000339_05456563_05486320 UBASH3B, UBASH3BA coding upstream 350358 5456041 ~ 5486473 (+)
CI01000339_05434579_05443951 NA coding upstream 392674 5434495 ~ 5444185 (+)
CI01000339_05841485_05849982 STK36 coding downstream 752 5841485 ~ 5850533 (+)
CI01000339_05924933_05931878 HMBS, HMBSA coding downstream 83982 5924715 ~ 5932584 (+)
CI01000339_05968915_05972679 DPAGT1 coding downstream 127597 5968330 ~ 5973090 (+)
CI01000339_05974223_05980520 HINFP coding downstream 133490 5974223 ~ 5980566 (+)
CI01000339_05982674_05984181 NA coding downstream 141941 5982674 ~ 5984201 (+)
G483862 NA non-coding upstream 608 5835833 ~ 5836223 (+)
G483860 NA non-coding upstream 8917 5827690 ~ 5827914 (+)
G483859 NA non-coding upstream 9153 5827369 ~ 5827678 (+)
G483856 NA non-coding upstream 11369 5825234 ~ 5825462 (+)
G483843 NA non-coding upstream 34073 5802553 ~ 5802758 (+)
G483822 NA non-coding downstream 78095 5918828 ~ 5920723 (+)
G483894 NA non-coding downstream 205686 6046419 ~ 6046876 (+)
G483907 NA non-coding downstream 361657 6202390 ~ 6207166 (+)
G483980 NA non-coding downstream 452967 6293700 ~ 6293903 (+)
G483981 NA non-coding downstream 453483 6294216 ~ 6294517 (+)
G483672 NA other upstream 597047 5227323 ~ 5239784 (+)
CI01000339_03088452_03091633 NA other upstream 2747126 3088110 ~ 3091633 (+)
CI01000339_02821530_02821886 MRPL41 other upstream 3012938 2820576 ~ 2823479 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 3638022 2196307 ~ 2198809 (+)
CI01000339_06041909_06043927 ATP5L other downstream 201084 6041817 ~ 6044034 (+)
G484139 NA other downstream 1105653 6946386 ~ 6966146 (+)
G484134 NA other downstream 1106060 6946793 ~ 6947480 (+)
G484172 NA other downstream 1273850 7114583 ~ 7115459 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030166 zgc:158412 coding NC_007116.7 CM002889.2 30384554 ~ 30391820 (+)