CI01000339_06041909_06043927 (ATP5L)


Basic Information

Item Value
gene id CI01000339_06041909_06043927
gene name ATP5L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6041817 ~ 6044034 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_06041909_06043927.mRNA
ATGGCCCAGGCGGTACAGAAATTGGTGGCTAAAGTGCCAACGTTGGTCGGCGCTGCTGTGAACTACTCCAAGCCCCGGCTAGCCACATTCTGGTATTACGCCCGTGTGGAGCTGGTGCCTCCCACCCCTGCCGAGATCCCCAAGGCCATCAGCGGCTTCCAAGATCTCCTCAAGAGCTTCCAGTCAGGACGGCTCGGTCAGACCACAGTCAGGGATGCTCTGAGGAATGGACTTGTTACCACAGAAGTTCTGATGTGGTTCTACATCGGGGAGATCATTGGGAAGGGAGGCATTATTGGCTATGATGTATAAATGTGGACTGTCCTGTTTGCCTTTTCTCGTTGCTTTTGTCTGTTCCCTTCTTTATCAGAATTCTTGGAATCCAGGAACTAA
>TU555231
ATTGAAGGGTCCTTCGCTGGAGGTGACATTCATTGAAGGGCCCCGGTTTGTGGAGAGAAGCGGCGAATAAATCTTCACAGTTCACAGAAATCATGGCCCAGGCGGTACAGAAATTGGTGGCTAAAGTGCCAACGTTGGTCGGCGCTGCTGTGAACTACTCCAAGCCCCGGCTAGCCACATTCTGGTATTACGCCCGTGTGGAGCTGGTGCCTCCCACCCCTGCCGAGATCCCCAAGGCCATCAGCGGCTTCCAAGATCTCCTCAAGAGCTTCCAGTCAGGACGGCTCGGTCAGACCACAGTCAGGGATGCTCTGAGGAATGGACTTGTTACCACAGAAGTTCTGATGTGGTTCTACATCGGGGAGATCATTGGGAAGGGAGGCATTATTGGCTATGATGTATAAATGTGGACTGTCCTGTTTGCCTTTTCTCGTTGCTTTTGTCTGTTCCCTTCTTTATCAGAATTCTTGGAATCCAGGAACTAAATAAATGAATATTATTAAAGAAAGAA

Function

symbol description
atp5l Predicted to enable proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to several human genes including ATP5MG (ATP synthase membrane subunit g).

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process

KEGG:

id description
K02140 ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_06041909_06043927.mRNA False 393 mRNA 0.52 3 6041909 6044008
TU555231 True 511 TUCP 0.50 3 6041817 6044034

Neighbor

gene id symbol gene type direction distance location
CI01000339_06033619_06038517 PDZD3B coding upstream 3369 6033619 ~ 6038540 (+)
CI01000339_05994065_06027592 ABCG4, ABCG4A, ABCG4B coding upstream 13362 5994065 ~ 6028547 (+)
CI01000339_05982674_05984181 NA coding upstream 57708 5982674 ~ 5984201 (+)
CI01000339_05974223_05980520 HINFP coding upstream 61343 5974223 ~ 5980566 (+)
CI01000339_05968915_05972679 DPAGT1 coding upstream 68819 5968330 ~ 5973090 (+)
CI01000339_06060658_06063401 NA coding downstream 16556 6060564 ~ 6063401 (+)
CI01000339_06069549_06075897 RUVBL2.L, RUVBL2 coding downstream 25541 6069549 ~ 6076100 (+)
CI01000339_06208270_06213269 UBE2G1A, UBE2G1 coding downstream 164262 6208270 ~ 6214195 (+)
CI01000339_06216378_06233911 ANKFY1 coding downstream 172370 6216378 ~ 6234136 (+)
CI01000339_06238852_06254371 ZZEF1 coding downstream 194317 6238325 ~ 6254478 (+)
G483822 NA non-coding upstream 121186 5918828 ~ 5920723 (+)
G483862 NA non-coding upstream 205686 5835833 ~ 5836223 (+)
G483860 NA non-coding upstream 213995 5827690 ~ 5827914 (+)
G483859 NA non-coding upstream 214231 5827369 ~ 5827678 (+)
G483856 NA non-coding upstream 216447 5825234 ~ 5825462 (+)
G483894 NA non-coding downstream 2411 6046419 ~ 6046876 (+)
G483907 NA non-coding downstream 158382 6202390 ~ 6207166 (+)
G483980 NA non-coding downstream 249692 6293700 ~ 6293903 (+)
G483981 NA non-coding downstream 250208 6294216 ~ 6294517 (+)
G483989 NA non-coding downstream 262095 6306103 ~ 6358859 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other upstream 439648 5599544 ~ 5602261 (+)
G483672 NA other upstream 802125 5227323 ~ 5239784 (+)
CI01000339_03088452_03091633 NA other upstream 2952204 3088110 ~ 3091633 (+)
CI01000339_02821530_02821886 MRPL41 other upstream 3218016 2820576 ~ 2823479 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 3843100 2196307 ~ 2198809 (+)
G484139 NA other downstream 902378 6946386 ~ 6966146 (+)
G484134 NA other downstream 902785 6946793 ~ 6947480 (+)
G484172 NA other downstream 1070575 7114583 ~ 7115459 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030173 atp5l coding NC_007116.7 CM002889.2 30699260 ~ 30701891 (+)
rainbow trout (Oncorhynchus mykiss) G398852 NA non-coding NC_048569.1 CM023223.2 39318747 ~ 39320204 (-)