CI01000339_06753621_06757973 (CORO1CB, CORO1C, CORO1CA, COR1C)


Basic Information

Item Value
gene id CI01000339_06753621_06757973
gene name CORO1CB, CORO1C, CORO1CA, COR1C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6752018 ~ 6757973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_06753621_06757973.mRNA
AAATGATCAGACGAGTGGTACGACAGAGTAAATTCCGTCATGTGTTTGGTCAGGCGGTGAAGAATGACCAGTGCTATGATGACATTAGGGTTTCGCGGGTTACCTGGGACAGTGCCTTTTGTGCAGTAAACCCCAAATTTGTTGCTATTATTGTGGAGGCTAGTGGGGGTGGAGCTTTCCTTGTTCTGCCTCTGCAAAAGACGGGTCGTATTGACAAGGCCTACCCCACTGTTTGTGGTCACACAGGCCCCGTGCTGGACATTGACTGGTGCCCGCACAATGATCATGTCATTGCCAGCGGCTCTGAAGATTGTACAGTAATGGTGTGGCAAATCCCTGAGAACGGCCTCACCTCAGCTCTTTCTGAGCCAGTCGTGGTGTTGGAGGGTCACTCCAAGAGGGTGGGAATTGTGACGTGGCATCCAACAGCTCGCAATGTTCTGCTAAGTGCAGGATGTGATAATCTCATCATTATTTGGAACGTGGGCACAGGAGAAGCTCTGATCAACCTAGAGGACATGCATCCTGACGTGATCTTCAGCGTCTGCTGGAGTCGCAACGGCAGCCTCATTTGTACCGCATGCAAGGATAAGAAAGTGCGCGTTATCGATCCACGCAAGGGAAAGATCACTGCGGAGAAGGATAAGGCCCATGAGGGGGCCCGGCCCATGAGGGCCATCTTTCTGGCTGATGGAAACATCTTCACTACCGGCTTCAGTCGTATGAGTGAGCGGCAGCTGGCCTTATGGAATCCAAAAAACATGGAAGAACCGATATCAGTGCACGAAATGGACACCAGCAATGGAGTGTTGCTTCCCTTCTATGACCCCGACACTAATGTGGTCTACCTGTGTGGAAAGGGTGACAGCAGTATCCGTTACTTTGAGATCACAGACGAGGCACCGTATGTGCACTACCTCAACACGTTTTCCAGCAAGGAGCCCCAGAGAGGCATGGGATACATGCCTAAAAGAGGCCTAGATGTCAACAAGTGTGAGATAGCCAGGTTTTATAAACTTCATGAGAGAAAGTGTGAGCCAATTATCATGACCGTCCCTAGAAAGTCAGACCTCTTCCAGGACGACCTCTATCCGGACACAGCAGGTCCAGACCCGGCGCTAGAGGCTGAGGAGTGGTTTGAAGGCAAGAATGGTGAACCAATCCTGATCTCGCTAAAACATGGTTATGTCCCGGGCAAGAACCGCGACCTCAAAGTAGTCAAGAAAAATTTGCTGGATAACAAGGCAACCAAGAAGGTGGAGGAGCCAGCAACTCCTCAGAAACCTGCCTCTCCTCAGCTAACCAGAAAGAATGAAGTGAAGTTAGAGGAGCTGTTGCGAGAAGTCAAGTCCCTTAGAGATCTGGTCACGCTGCAGGACAGGAGAATCGCCAAACTGGAAGAGCAGGTGGCTAAAGTGGCAATCTAAGACACTGGTGGTGGTCTGAGCCATAGCGTCTGTATGGAGAGAAAGAGAGAGATTCAGGTGGGCAGGGGGGGTCAGTCACTGCCAAAATTTTTCAATTTGACTCGATCATTCCGCTTGGTGTTTCTCACAAGGACAACTTCAAGCAACATTCCAAGATGGACTTTTACTTTTTGTCAAGTCTCCCCCAAGCATTCGCATAGCAGAAGCAAAATTGTGGCAAAGAGTGGTCACTGGTTTTAACTGATGTTTTACATTTTGTTAAAAATGTTCTTACTTTTTTTAGTTATTGTAACATTGTTTCCATGAGTATTCTGATATTTACCAGTATGTTACAGAGTGTTGTTGTATATACACATCAGTATTTCTCTTTCCTTTTTTTGTTGTGCTGCCAAATTTGAGGTGATGCAGTAACCTCTCCTTTTATTTCTACTTTTATATGTTTTTCCCAGTTGTAGATAGTGGATTATTGAAAAACATGAATTTTAAATGTCATACTATTCAAAGTGGGACATAAGCAGAAAAAGCAGTACTGTGTGATTGTAAAGGCCATTGGTACTTCAGAAAGTAATCATAGGTGATGATAAGGGTATATGATTTAAGGCTGGCCCACACTAAATGATTTTTAAAATCTAATCAGATTTTCAAAATGTGAGAGACCACAAACATGATAAAAAAAAAAAATCATAGATTTAACAGTTTTATTTCTTATAGTGTGTGGAGTGCTGTGATGTGACCAAGAAAGCACATAATACACTAACAGATTTCATTCACAAACAACCACAGTCCCAACTGTGAACATGGGAAATCTCGAAAAACGTGACTTTAGAGTAAACAAACATGGCAGACGACAGGCAAGAAGAAATGGCTATAATAGAGTTTAGACTGCTTTTTTATAGAAACATTATGGAAAAAGGCTTGGATGAAGTCGTGTTATGCTTCCGGCAGCTCGCTTTCTGATTTTTGTATTGTTTCGTTCCACCTGACATGAATATTTTCTGATCATAAATATTGGATACATGTTGGATATTTACGATTTGAGATCGATGTGGCCCCGACGTTCTTCCGAGCAGATTCAATCACTCTTAACACAGATCACACCACAGGAAAATCTGATAAGATAATCTGTAGAACCATCAAGATAATCAAAACTTTAGCTAGGATTGTCAAAAGAGAATTGAATTAGGGCCAAAATCGGCCCGATTATCTTGTAGTGTGCGGGTGCCTTTAGTGAAATCTAAGAAATGTTCATAACCATTAAAATTCCACATTCAGGATTTTAAATCGGTCCATATAATGTCCCTTGTGATGATCATGATCACTGAAGTATTAAGCACATAGTCGTCTCCTCCATTGCCTGGCTTTGAGATCATCATAATTGATTATAAAGCATCCAACAACAGGGTTTTTCAAAATACAACACGATCAGTTACAATATATCCAGAAGCAATAACACAATTTTGCAGAATGAATGTGAACATAAACCTAAACCTGTTTGCAAGTATTGTTCAAAATGCGTTAATCATGCATACGCATCATAAATCAAAAACCTACCGCTGTAACTTAATGGTAATTATGAAATTACTGTTGCACCTCAGGAAATAAA

Function

symbol description
coro1ca Predicted to enable actin filament binding activity. Involved in neural crest cell migration. Predicted to be located in endosome membrane. Is expressed in several structures, including digestive system; nervous system; neural tube; periderm; and solid lens vesicle. Orthologous to human CORO1C (coronin 1C).
coro1cb Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in actin cytoskeleton. Orthologous to several human genes including CORO1C (coronin 1C).
coro1c Enables actin filament binding activity. Involved in several processes, including endosome fission; endosome membrane tubulation; and negative regulation of cell-substrate adhesion. Located in several cellular components, including endosome membrane; lamellipodium; and lateral plasma membrane. Colocalizes with vesicle.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_06753621_06757973.mRNA True 3030 mRNA 0.43 10 6752018 6757973

Neighbor

gene id symbol gene type direction distance location
CI01000339_06747841_06748719 NA coding downstream 2197 6747288 ~ 6749821 (-)
CI01000339_06736326_06742993 PKN3 coding downstream 9025 6735893 ~ 6742993 (-)
CI01000339_06659726_06696599 FAM102A, FAM102AB coding downstream 55419 6659669 ~ 6696599 (-)
CI01000339_06655858_06658182 DPM2 coding downstream 93836 6655294 ~ 6658182 (-)
CI01000339_06644384_06653741 PIP5KL1 coding downstream 98277 6643767 ~ 6653741 (-)
CI01000339_06770289_06776849 SSH1B, SSH1 coding upstream 12112 6770085 ~ 6776849 (-)
CI01000339_06779978_06786701 SVOP coding upstream 21871 6779844 ~ 6786701 (-)
CI01000339_06867675_06873093 NA coding upstream 109232 6867205 ~ 6873093 (-)
CI01000339_06883625_06889375 CABP7, CABP7B coding upstream 125082 6883055 ~ 6890499 (-)
CI01000339_06917949_06919576 NA coding upstream 159222 6917195 ~ 6919576 (-)
G484870 NA non-coding downstream 17839 6733772 ~ 6734179 (-)
G484804 NA non-coding downstream 260101 6491716 ~ 6491917 (-)
G484801 NA non-coding downstream 267162 6484622 ~ 6484856 (-)
G484641 NA non-coding downstream 279499 6470855 ~ 6472519 (-)
G484943 NA non-coding upstream 57231 6815204 ~ 6817063 (-)
G484871 NA non-coding upstream 239838 6997811 ~ 6998975 (-)
G484826 NA non-coding upstream 242920 7000893 ~ 7004773 (-)
G484991 NA non-coding upstream 331048 7089021 ~ 7089385 (-)
G485000 NA non-coding upstream 365852 7123825 ~ 7124186 (-)
G484645 NA other downstream 495906 6254331 ~ 6256112 (-)
G484702 NA other downstream 727196 6021828 ~ 6024822 (-)
G484394 NA other downstream 1477748 5274086 ~ 5274270 (-)
G483481 NA other downstream 1898571 4851757 ~ 4853447 (-)
G483512 NA other downstream 2133293 4618112 ~ 4618725 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018737 coro1c,LOC106584990 coding CM030135.1 CM030135.1 19274909 ~ 19282966 (+)