G482035


Basic Information

Item Value
gene id G482035
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2901666 ~ 2901935 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU553139
TTGCTGTGAGCTCGGAAAAACACTTCCTCTTTAATGTCCCGCTGGCTGTAGTGGTGTTTCAGTCAGCTCCATATGTTAAAAAATGCACACAAATAATGCGCGACTCATAGAGTTTGAACTTGATGGACTCAAATACAAAAAAATGCAGTCAGTGCTTAACTCAAGGAGTTCAGTAAAGTTGCCGATATATTCACAGATTCGAATTTCCTGGATAACTCTTGAGCTAAACGTTGTTAAAACACAAATGCAGCTATTTCCAATCATAGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553139 True 270 lncRNA 0.39 1 2901666 2901935

Neighbor

gene id symbol gene type direction distance location
CI01000339_02827191_02829073 NA coding upstream 72408 2827191 ~ 2829258 (+)
CI01000339_02821530_02821886 MRPL41 coding upstream 79690 2820576 ~ 2823479 (+)
CI01000339_02724520_02726734 NA coding upstream 174489 2724520 ~ 2727177 (+)
CI01000339_02534217_02550941 ATP6V0A2B, ATP6V0A2 coding upstream 350442 2534217 ~ 2551224 (+)
CI01000339_02520632_02526538 DGCR8 coding upstream 374762 2519398 ~ 2526904 (+)
CI01000339_02906594_02907565 FUT7 coding downstream 4355 2906290 ~ 2907736 (+)
CI01000339_02922115_02925261 CARNMT1 coding downstream 20180 2922115 ~ 2925304 (+)
CI01000339_02926088_02926877 NA coding downstream 24018 2925953 ~ 2926999 (+)
CI01000339_02930318_02952950 TRPM6 coding downstream 28383 2930318 ~ 2954199 (+)
CI01000339_03088452_03091633 NA coding downstream 186175 3088110 ~ 3091633 (+)
G482004 NA non-coding upstream 60998 2839855 ~ 2840668 (+)
G481898 NA non-coding upstream 181732 2717750 ~ 2719934 (+)
G481899 NA non-coding upstream 249344 2644800 ~ 2652322 (+)
G481855 NA non-coding upstream 346557 2552923 ~ 2555109 (+)
G481851 NA non-coding upstream 390492 2509349 ~ 2511174 (+)
G482048 NA non-coding downstream 47687 2949622 ~ 2950082 (+)
G482069 NA non-coding downstream 178458 3080393 ~ 3083969 (+)
G482139 NA non-coding downstream 182232 3084167 ~ 3084374 (+)
G482192 NA non-coding downstream 227716 3129651 ~ 3130283 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 702857 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1323963 1571624 ~ 1577706 (+)
G481321 NA other upstream 1610933 1289321 ~ 1290733 (+)
G480761 NA other upstream 2261289 634414 ~ 643423 (+)
G483672 NA other downstream 2325388 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2698526 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3139882 6041817 ~ 6044034 (+)
G484139 NA other downstream 4044451 6946386 ~ 6966146 (+)

Expression


Co-expression Network