G482069


Basic Information

Item Value
gene id G482069
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 3080393 ~ 3083969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU553175
TGGCTGTTTATATGGAGTGTATAATTCATATATTGATACATAGTGGGTCTTCATTTGTATACATTTATTGTTGGCATCAATTAATTGCCACACAAGGCTAGCAGGATCGTCTCATAGTCTCCTTTGGTGTCATCCTAAAACAAACAAAACACACAATCTTTAACAATTGAATCTTTACGGGACCACAGTATAAACACTCACTATTTTGTGTTTATGTATTGAAGAGTATAATAATGACAACACAAAATAATGATATTTTTTATAATTTGCTACTGAGATTTATTTACCTGGATGTCCTGGTAGAGACTCTTGCCAAACTTACTCTGATACTCTTGCTTGATTTTGGCCAAGTCAATTTCAGAGCGGCTCACCAATATTCTGGTCAAGATTTTGCCTTTGTAACCAGAGCCCTGTGAAAACACAAAGTCACACTGATGGTTCTTGCTGCAGTTTAAGTTTATTTATTCCAACACATTTAGAAAAGTAGTGATATAAAAAGGTATAAATTATTTGTTACACTTGCCTTCATTGCTAGATTTAGTTTCTCAGCAAAGAATGCAGATTTGTTTCCAGCACATTTCACTGTTGAAAAGATGACAAGTCACAGTGTTATGAAAACATGATTTTTTTTTTTTTCCCGGAAATATCATGCAAAGGCCAGCTTTGGTTTCATTGCTCCAAGCTTGTCAAATTCTTGTCATACTGTAAGAATGCAATTCAAGTCTTGAAAGGTATGGTTCATCTAAGACTGTCTATGGCCATTCAAAGAAAAGTTTGCAGTGACATTGCATGTCATACCATTTTAAAATGCAATATGTAATGCTATAGACAGTCATGAAGGTCTCACCAACAGCAGTCAAGCAGTTCTCAATATCACCCTTCAGCTCCAGATCAATGGCTTTTGCAACATCCACTTTACTGTACTTGGAGTACTGCTGAAAAACTAAAATGTAAAGAAAAAAATATGACATTATTATCATCACCAAAGTGGATTAGAAGACAATTGCTCTACTTATTTTGAAAACAGGGTGGTGGAGGAGGTCAGCCATACCTTTCCTCAGGTGAGGAGCGTTCCGTGTAGTGAGGATGTCAATGAACACGGCACAGTCGGTGCCTTTTCTTTTCTCTCCTGCCTCATACAAGGCCTACAGGTAGAACGAGAGGTCAAGAAACACGCACATACAACACCCCACCCCATGTATACAATACACACTTAATTACCCTGGCATCTTTGTCAGCCAGGTCATCTTGCACAATCTTGTCTTCACTTCTTGTAGCCTGTGAATTCAAATAAAAAGAAAGTTTATTGACAAACCAATTCAAGTCACGAATCACTCTCCTAATGAACTGAGGTGCAGAATCAGATGTTTTCGATCAGACAGACATCCAAGTAATGCGGTACTGGGAGGGGCAGAATTGAAAAACAATACTAGAAAATGTAAGGCGGATCATCTATGTAAAAAAAAGCCAACCTTGCAGAGAGCAAGTAGGGCATTCCTGAAGTCGCCACTCGTCTCAGACTTGATTTCCGCCTCTAGTTCCTTTTTATAATCTATAAATGTAAGCCATACATTAATTTACATGTAATGAACTCAGATGCCATAAATCAGGGGTGTCCAATCCTGCTCCTGGAGGGCCACTATCTTGCGGAGTTTAGCTCTAATTCTAATTAACACACCTGAACAAACCAGCTAAGCAAGATCTTAAGGATAACTAGAAACTTCCAGACAGGTGTGTTGGAGCAGGTTGGGGCCAAACTCAGCAGGACGTTGGCCCTACAGGAGTAAGATTGGACACCCCTGCCATACACGTATTCAAAAGATAACTGGCTGATAATTAGCATTAATGTTACCTTGTTTGAAAACCTGTTTAATTTCTCGGATCTCTTTATTGGTCCTAGAGGCCAGAATCTCAATAAGTGTATCTTCATCTGTGCCCAAACCCTGGAGAGAAAAAGACTTTGAGTTATACAACAACCCATGTCAAATCTTGTGTGTGGGGTTGTGAAATTGAGAAGATATACAAGTCCAGGGGCTGTCTAATTAAAATATTCACCATATTCAGGGTAAAAATGTGAAGTTTATCTATATCTACAGCCCTGAAATAATGTTACCTTCATGGCATTTTTGAGCAGAGAGGCATCATACTGAGCAGGAGTCATCAACAGGCTCAGAACCACATCTTCCAGCTCACCTTTAAGGGCAGCTTTCAGGGCTACATCCAGAGGCTGCACAGAGGAGAAGAGATAATTTAGGTGAGGGAGGATCCAGAGAGTAAGAATGTGTTCACTTCAGGTCTAGTGAATGTAATACCTTGCCAGTGGCTTGCTGGTAAGCAGCCTTAATTTGCTGGCGCTGGGCATTGCTCCTGTGGACCAGTGTATTGATGATTGTGGGCTCATCCACACCTGTGAACAAACATTTGTGTCAATAGAGCAAACAGATGCACAATGCACTGACATACATGGGTTTTATAAATCTTCACATAAACCAACCTTTTGCCTTGATAGCTTTGTCCAAGACTCCTGCATCTGCAGCTGCATTAAACTGAGCAAAGGGCTTCACTGTCCCCTGCCCCTCTGTGATGTCTTGTACTGTGCTGTCTTGCATGCCTTGATAGGCAAGCTGCTCGAGAAAAGCACTGACGAATGACATGTTGACACTTGGAACTGAACAGCCAAACCAAGACCAAAAACACAGCAAGCGAGTAGGAGAAGAGTTTCAGCTGTATTTATACTCACAGAGCCACACCTAGTAACATCAGTTTTAACTCTTGCGCTACAGTTGGGCGTTGCCTCTGCAAGTCTACTTTCCTCCTTCCTTGCCTCCTTCCCGTATTAAACACCCGGGGCACGTTCAAGCTCAAACCGGTGCGCAACGTTTTGTTACGGTTTCCGGGTTGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU553175 True 2903 lncRNA 0.41 3 3080393 3083969

Neighbor

gene id symbol gene type direction distance location
CI01000339_02930318_02952950 TRPM6 coding upstream 126194 2930318 ~ 2954199 (+)
CI01000339_02926088_02926877 NA coding upstream 153394 2925953 ~ 2926999 (+)
CI01000339_02922115_02925261 CARNMT1 coding upstream 155089 2922115 ~ 2925304 (+)
CI01000339_02906594_02907565 FUT7 coding upstream 172657 2906290 ~ 2907736 (+)
CI01000339_02881178_02904181 NA coding upstream 175320 2879942 ~ 2905073 (+)
CI01000339_03088452_03091633 NA coding downstream 4141 3088110 ~ 3091633 (+)
CI01000339_03092627_03099083 NA coding downstream 8658 3092627 ~ 3099210 (+)
CI01000339_03140715_03144128 ZFAND5A coding downstream 56568 3140537 ~ 3145379 (+)
CI01000339_03174100_03188909 ABHD17B.S, ABHD17B, F108B coding downstream 90131 3174100 ~ 3189475 (+)
CI01000339_03192684_03218127 TMEM2 coding downstream 108715 3192684 ~ 3218667 (+)
G482048 NA non-coding upstream 130311 2949622 ~ 2950082 (+)
G482035 NA non-coding upstream 178458 2901666 ~ 2901935 (+)
G482004 NA non-coding upstream 239725 2839855 ~ 2840668 (+)
G481898 NA non-coding upstream 360459 2717750 ~ 2719934 (+)
G481899 NA non-coding upstream 428071 2644800 ~ 2652322 (+)
G482139 NA non-coding downstream 198 3084167 ~ 3084374 (+)
G482192 NA non-coding downstream 45682 3129651 ~ 3130283 (+)
G482193 NA non-coding downstream 48343 3132312 ~ 3132573 (+)
G482076 NA non-coding downstream 53350 3137319 ~ 3137805 (+)
CI01000339_02821530_02821886 MRPL41 other upstream 256500 2820576 ~ 2823479 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 881584 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 1502690 1571624 ~ 1577706 (+)
G481321 NA other upstream 1789660 1289321 ~ 1290733 (+)
G480761 NA other upstream 2440016 634414 ~ 643423 (+)
G483672 NA other downstream 2143354 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 2516492 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 2957848 6041817 ~ 6044034 (+)
G484139 NA other downstream 3862417 6946386 ~ 6966146 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G41442 NA non-coding CM030125.1 CM030125.1 15955435 ~ 15956038 (-)
tiger barb (Puntius tetrazona) G35047 NA non-coding NC_056703.1 CM032072.1 10337747 ~ 10341167 (-)