G483822


Basic Information

Item Value
gene id G483822
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5918828 ~ 5920723 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU555157
ACACTCCACTAATGTTCTTTTGATTATCCTCAGTCTGATTATAGCATTAAAAACAGTGGCATATCGTTACCTCTCTGTGTGGATTGGAGGAGGCAGAGATTTGGATGCATCTGATGGTCTTTTGCCTGTGCTGGGCAAGATGATATTTTCTCCCTCTGACTTAAGTTTGTCCACAAAGTCATCCACCTCCTTCCCCTTGCCAACCAGTTTAAGTGCTTTACTTGGACCACTGGACCTGACAGGTGCAGGGGTGGGTTTGGGTTTCTCAAGCTCGATCAGCGTGTCTGTGATGATGGATGTGTTGCTGCTGCTCATGCCCGAGCTGCCGAAACCACCGAAGCCCGGTCCCTTCTTTCCACGCTCTGCATCTCGCCGTATCTGCTGAAGTTCTTTAGCCTTCCGTCTCATCTCTGCCTTAGCCTCGCGCTCCTGAGTCTCTCTGACAGCACGGAACACCTTTTCCTCATGAGAGTCCATCTCTGTGAATGTCCGGATCTGGGCTAGGTTGACATTTTCTCTATAACCGAGGGCAACAATCTCATCGAAGGCAAAGATGAGGTCAAAGCAGTGCTCAGAAATCTCACTCTCCTCCAGGACACGACAATATTCAGGAATCACACGTGAGAAGAGACGCAGTGTCTCCAGGTCCTCCAGTATATTACTGTTCTTGGTGGTGACCAGCACCATGTACAGCTTTTCCAGAGGTTGGTAGACGTAGCGGACACTCTCCGTCTCCACAAATGTGTGCTGTTTGCCAGTGTTCATCAATTTGGGAAAAGCGGCCAGCAGACCCTCCACTCGCGTCCGTGTCATCTCCACAAATTGCCGTGACACCAGGGCCTTACCTGCCTTGGTGCAGATTGCTGCTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU555157 True 871 lncRNA 0.51 4 5918828 5920723

Neighbor

gene id symbol gene type direction distance location
CI01000339_05841485_05849982 STK36 coding upstream 68295 5841485 ~ 5850533 (+)
CI01000339_05836831_05840321 NA coding upstream 78095 5836831 ~ 5840733 (+)
CI01000339_05655376_05675186 ADAMTS15A coding upstream 243245 5655179 ~ 5675583 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B coding upstream 317612 5599544 ~ 5602261 (+)
CI01000339_05544723_05561118 NA coding upstream 356859 5544318 ~ 5561969 (+)
CI01000339_05924933_05931878 HMBS, HMBSA coding downstream 3992 5924715 ~ 5932584 (+)
CI01000339_05968915_05972679 DPAGT1 coding downstream 47607 5968330 ~ 5973090 (+)
CI01000339_05974223_05980520 HINFP coding downstream 53500 5974223 ~ 5980566 (+)
CI01000339_05982674_05984181 NA coding downstream 61951 5982674 ~ 5984201 (+)
CI01000339_05994065_06027592 ABCG4, ABCG4A, ABCG4B coding downstream 73342 5994065 ~ 6028547 (+)
G483862 NA non-coding upstream 82605 5835833 ~ 5836223 (+)
G483860 NA non-coding upstream 90914 5827690 ~ 5827914 (+)
G483859 NA non-coding upstream 91150 5827369 ~ 5827678 (+)
G483856 NA non-coding upstream 93366 5825234 ~ 5825462 (+)
G483843 NA non-coding upstream 116070 5802553 ~ 5802758 (+)
G483894 NA non-coding downstream 125696 6046419 ~ 6046876 (+)
G483907 NA non-coding downstream 281667 6202390 ~ 6207166 (+)
G483980 NA non-coding downstream 372977 6293700 ~ 6293903 (+)
G483981 NA non-coding downstream 373493 6294216 ~ 6294517 (+)
G483989 NA non-coding downstream 385380 6306103 ~ 6358859 (+)
G483672 NA other upstream 679044 5227323 ~ 5239784 (+)
CI01000339_03088452_03091633 NA other upstream 2829123 3088110 ~ 3091633 (+)
CI01000339_02821530_02821886 MRPL41 other upstream 3094935 2820576 ~ 2823479 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 3720019 2196307 ~ 2198809 (+)
CI01000339_06041909_06043927 ATP5L other downstream 121094 6041817 ~ 6044034 (+)
G484139 NA other downstream 1025663 6946386 ~ 6966146 (+)
G484134 NA other downstream 1026070 6946793 ~ 6947480 (+)
G484172 NA other downstream 1193860 7114583 ~ 7115459 (+)

Expression


Co-expression Network