CI01000340_03713291_03747080 (PEX5L, PEX5LA)


Basic Information

Item Value
gene id CI01000340_03713291_03747080
gene name PEX5L, PEX5LA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3712753 ~ 3747272 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_03713291_03747080.mRNA
ATATTTATGCGCAATTATGTTCTTAGAAATGGAAAAACTTTCTCTCTGTTTAAGTGAGAAAGGGAGAGAGAAACATCCTCAGGCTAGGGACGTTTGTCAGAGGGGGGCAAGGTGAGAATTGTCGTCTCAGTCCTGTAAATAGGCAACAGCTGTAAGGGTGGTAACTACCAGCCTTACCAATCACACGCAGAGATGGTCATGGCGCAAAGGAGGCTGGCTGCAACTCAAACAATAGGAGAACAGGAGGCCAAGTGCATTAATGTAGATCTCATCGCACACTTCTGCTTGATTTTTCAGCTGGTGAGCGAGCAACAAGAGAGCCGTCCCTTGCTGAGCCCTTCTATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGAGCTGCCCGCCCAGTAACCTCCAACACAGCAGTACTGTCCTCCTCTCTGGACTTGCTAGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGGAAGAGTCCTCTTTCTTCTAAGGGCACGCCATACAGGAAGAAGCCAGATGAAACAGAGCTGATCCAAGTGGATGTTGAACAGAGCACACCCTGTTCCCACACACCTGAAAAAATTTCATTGGACTCAGTAGCAGTTCCATCTTCATTGGACAAATGGGAAGAACTCAACCCACACCCAGAGCGAAATGGTAGCAGAAAGTGGAAACTTGAGAGAAGACGTTCATCAAAAAATTCTGGCGAATTTGTGTGGTCTATGGATTGCAAGACTCAGCTAGACACTGCCCCCAGGAACTCCCTGGAGGTAAATAATAAAGTAGAGGCCGAAGCCGTGCCAGTAACTCAAGGCCGTTTGAGCAAAGACCAAAGGTGGGGTAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAAGAGTTTGAGAGAGCTAAGGCAGCAGTGGAGAAACAGGCAGACAGTGGCGGTCCATGCAGGATGTTGGCTGACTCTGTGCTGGTCAGGGCCAAATGTAACACAAAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAGTGGGAAGAGCTCGCTCGCAGGAACTGGTTAACAGAGAACGACCAACCACAGATTCCCTCTAATGTGTCTCCTTACGAAAAGGGATACTACTTCCATACAGATAACCCTTTCAAAGACTGGCCAAATGCATTTGAGGAGGGATTACGCAAGTCAAGAGAGGGAGAACTGCCTAATGCCGTACTTCTTCTGGAAGCAGCTGTGCTGCAGGACCCTCAGGATTCAGAGGTGAGGGAGTGGGCTTATAAAACAATTGTAAGCCAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTCATGGCCCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCACTGCTGGGCTGGATAAGGCATAACCCCAAATACAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGCTCACGACGACTCTCCCACTCCTCTTCGACTGGCTGCCCCCTGCTGCCAGAGGTGAAGGATCTGTACCTGGACGCTGCCCAGCAGAACTCGGACACTATCGATCCAGACCTGCAGACAGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCGGTGGAAGCCTTCAATGCTGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGCGAGGAAGCTGTGGAGGCCTACACCAGAGCCCTGGAGCTCCAGCCCGGCTTCATCCGCTCACGTTACAACCTTGGCATCAGCTGCATTAATATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCTCTTGGTATGCAGAGGAAGAGCAGGAGTCGGCAGCTTTCGCACCAGGTCATGTCTGGAAACATCTGGGCGGCCCTGCGGATAGCACTGTCCATGCTGGACCAGCCAGAGCTTTTTCAAGCTGCTAACATAGGAGACCTGGACTTACTCATGAGAGCCTTTAACCTGGATATGTGAGCGAGAATACCCTTTAACCATGGCAAATATCCAAAGTACTTAATGGGAAGAACTTTGTCAGAAAGCAACATTTTTTTCTCGCAGAGCACCTTTACATTCCTGAGAACTGAGTGCAGGATGATACCATTTTAATAGATTTGCACATCAGTTTACGATTATCCTAAAGAGCACAATGCCAGGCGAAGATTGTACAAGTATGCCTTAGAGAAAAAATCAGCTAGACCTGCAATGTAACAGTGGGAATCGGAGGAGAACTTAATAATTCCACAACTGATCAGAGGAACGCAGATTATAAATGTGCAAGAAGAACACTGACTTCACATCAATGACTTGATTAGAAATGTACTGTACTGCGTAGACTTTATGTATTGGTTCACTTGCACTCTTTATTTGAGATGGTGGGGTTATTATTGATTTTGGTGGCACTTAGTTCAACCCTGGACACTCCTCACCTGATCTCTGCTGCATCATCCCCTTTATTTCCTGGAGCTTTCAGACCAGATTAAGAAGCCTTACTTTATTGTGCATGTAAAATAAA

Function

symbol description
pex5la Predicted to enable peroxisome matrix targeting signal-1 binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be active in cytosol and peroxisomal membrane. Orthologous to human PEX5L (peroxisomal biogenesis factor 5 like).
pex5l Enables peroxisome matrix targeting signal-1 binding activity and small GTPase binding activity. Predicted to be involved in protein import into peroxisome matrix, docking and regulation of cAMP-mediated signaling. Predicted to act upstream of or within maintenance of protein location and regulation of membrane potential. Located in cytosol. Part of receptor complex.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG:

id description
K13342 PEX5, PXR1; peroxin-5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_03713291_03747080.mRNA True 2629 mRNA 0.49 13 3712753 3747272

Neighbor

gene id symbol gene type direction distance location
CI01000340_03670820_03675367 NA coding downstream 37386 3670713 ~ 3675367 (-)
CI01000340_03622734_03659141 TMEM131 coding downstream 53597 3621970 ~ 3659156 (-)
CI01000340_03607549_03614126 BIVM coding downstream 98627 3607130 ~ 3614126 (-)
CI01000340_03561521_03596697 NDK7, NME7 coding downstream 116056 3561479 ~ 3596697 (-)
CI01000340_03528645_03535760 DPT coding downstream 176793 3528300 ~ 3535960 (-)
CI01000340_03750211_03772917 NA coding upstream 2663 3749935 ~ 3773916 (-)
CI01000340_04086574_04090310 NA coding upstream 338958 4086230 ~ 4090310 (-)
CI01000340_04277249_04284722 NA coding upstream 529867 4277139 ~ 4285407 (-)
CI01000340_04362537_04371224 LURAP1 coding upstream 615103 4362375 ~ 4371224 (-)
CI01000340_04381260_04383972 TTC4 coding upstream 633812 4381084 ~ 4383972 (-)
G488582 NA non-coding downstream 91121 3618019 ~ 3621632 (-)
G488664 NA non-coding downstream 168157 3544379 ~ 3544596 (-)
G488663 NA non-coding downstream 168703 3543462 ~ 3544050 (-)
G488651 NA non-coding downstream 187153 3525348 ~ 3525600 (-)
G488649 NA non-coding downstream 191157 3521372 ~ 3521596 (-)
G488588 NA non-coding upstream 115880 3863152 ~ 3863573 (-)
G488568 NA non-coding upstream 120532 3867804 ~ 3869876 (-)
G488748 NA non-coding upstream 124412 3871684 ~ 3872011 (-)
G488750 NA non-coding upstream 127186 3874458 ~ 3874738 (-)
G488593 NA non-coding upstream 145497 3892769 ~ 3893172 (-)
G487884 NA other downstream 1810481 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 2921344 786551 ~ 791409 (-)
G485786 NA other downstream 3387037 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 3630658 62780 ~ 82095 (-)
G488782 NA other upstream 258533 4005805 ~ 4006448 (-)
G488862 NA other upstream 759924 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 852948 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 1573481 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 2436018 6095704 ~ 6194501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009438 NA coding CM030126.1 CM030126.1 38031385 ~ 38059273 (+)